rs262369686 SNP Detail

Summary

• ID
  rs262369686
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3281334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCTCCTT CCTTGCCAGA
  GGCTTGCAGC TCCATCTTTG CCATTAAGAA CAAAGACAAG TAGTCACTTT CTCTTTCCCT
  TTCCTTTCAC ACGAGTGGAT GGAGTGGAAT TCGTCTCTTC TACTCCCCAG AGTCTTACCC
  TTTTAAAGTC CGTTTGCTTT GTGTGGCAGG CGCACGAACC TCCCCTCTCC AGCCTCCTCC
  Y
  GTGGCTCTCT GCTGAGGGGA GTGGGAGCTT AAGAGATGAG GCAGAGACCC TCAGCTGGGG
  TCTCTATTGG ATCTTTTGCT TCCCTGAATC AAAGGCTTTT GTGGAATTCT CTTGGGAGCT
  GGCGGTGTCT GTTAAACTAG CAGAAAGTGG CTGTATTCGT AGAGAAGGGA ACACCAGTTT
  ATATAACATT GACTTCTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382239540	MGP_WTSI_11_3231337	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262369686					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382239540	MGP_WTSI_11_3231337	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3281334 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2477	CpG island 2477	438 bp proximal
Gm12592	predicted gene 12592	144 bp upstream
Gm74265	predicted gene, 74265	1502 bp downstream
Pik3ip1	phosphoinositide-3-kinase interacting protein 1	within coordinates
Rr402383	regulatory region 402383	274 bp upstream
Rr402384	regulatory region 402384	921 bp upstream
Rr441527	regulatory region 441527	516 bp distal
Rr441528	regulatory region 441528	within coordinates
Rr441529	regulatory region 441529	485 bp proximal
Tssr3405	transcription start site region 3405	575 bp downstream
Tssr3406	transcription start site region 3406	1151 bp upstream
Tssr100039	transcription start site region 100039	793 bp downstream
Tssr100040	transcription start site region 100040	640 bp downstream
Tssr100041	transcription start site region 100041	585 bp downstream
Tssr100042	transcription start site region 100042	554 bp downstream
Tssr100043	transcription start site region 100043	522 bp downstream
Tssr100044	transcription start site region 100044	504 bp downstream
Tssr100045	transcription start site region 100045	491 bp downstream
Tssr100046	transcription start site region 100046	422 bp downstream
Tssr100047	transcription start site region 100047	400 bp downstream
Tssr100048	transcription start site region 100048	373 bp downstream
Tssr100049	transcription start site region 100049	1092 bp upstream
Tssr100050	transcription start site region 100050	1127 bp upstream
Tssr100051	transcription start site region 100051	1160 bp upstream
Tssr106459	transcription start site region 106459	133 bp upstream
Tssr106460	transcription start site region 106460	919 bp downstream
Tssr106461	transcription start site region 106461	943 bp downstream