rs262384386 SNP Detail

Summary

• ID
  rs262384386
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126290889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGAAAAC ATCAGAAGGT
  ACCCTTATCC CAGCCTTTGT GTGGTGCTCA AGTAAAAGCT GCCAGTTACT GAAGAGAGAA
  GCAGGAAAGG TACAGGGGGA CACTTAGGAT CAAGTCTCCA GCAAGTCTGT CCAGTGTTCC
  TGTAAGGGCA AAGAGTGGGT CAGAGGTAGT CTAGGAAAAC CGGGGGGGGG GGGGGGGGGG
  T
  TTGGGCAGAG TCACTTCTCA CCTCCTCTAA CTCCAAATCC TCTTCCTCCT CTGTGTCCGC
  GTGGCACTGC CCAACCAGGT TTCCCCAAAG TAGTGATTTC TTGCAGCTGC CAAAGGTGCA
  GTTGGTGGAG ATGCCAGAGT GAGGATTCAG GGAGCCAGGG CTGGCACGTG GGCACCTTCT
  CCCCAGGCTG GGAAGAGGAC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373073438	MGP_WTSI_7_133835231	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262384386					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373073438	MGP_WTSI_7_133835231	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126290889 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19704	CpG island 19704	604 bp proximal
Rr400629	regulatory region 400629	1664 bp upstream
Rr655563	regulatory region 655563	649 bp distal
Rr655564	regulatory region 655564	1421 bp proximal
Rr655565	regulatory region 655565	1713 bp proximal
Rr655566	regulatory region 655566	1889 bp proximal
Slx1b	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	within coordinates