rs262388122 SNP Detail

Summary

• ID
  rs262388122
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57551652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCCCTCC ATCAGGAGCC
  TGGAATATGA CCTGCCCCTT GGGCCTCAGT TCCCTGCTAT ACAAAATGAT CAAAAAAAAA
  AAAAAAAAAC TCCTACTTAA GCTCCAAAGA TCCAGTGACT GGACACACCC CTTCCAAATA
  ACTGGTCTGG GTCCTGAGAA GCCTGGGAAA ATAGACTGAT GAGGATGCTG GGGGTGGGGG
  Y
  GGGGGGAACG GGGTACAGTA CCAATGCCCA GTGTCACCTC TACGCAGACT GGAAGCCCTG
  CCCAGTTTCT CCACCCAAGG GTCAGAGGTC CCTTGCTTTA AGCCTGATCC TCTGGCAGGT
  CAAGGGTGAC AGGCTTAGTT CAAGGACCCG GCCTTCTATC AGGCACAAAG GGAGGTGGCA
  TGGCCCTGGG CTGCTTGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	ST/bJ
ss377693396	MGP_WTSI_9_57492176	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	ST/bJ
rs262388122					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377693396	MGP_WTSI_9_57492176	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57551652 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21828	CpG island 21828	336 bp proximal
Csk	c-src tyrosine kinase	within coordinates
Rr679715	regulatory region 679715	1825 bp distal
Rr679716	regulatory region 679716	1136 bp proximal
Rr679717	regulatory region 679717	1274 bp proximal
Rr679718	regulatory region 679718	1323 bp proximal
Tssr85319	transcription start site region 85319	892 bp upstream
Tssr85320	transcription start site region 85320	1424 bp upstream
Tssr89801	transcription start site region 89801	129 bp upstream
Tssr89802	transcription start site region 89802	756 bp downstream
Tssr89803	transcription start site region 89803	785 bp downstream
Tssr89804	transcription start site region 89804	819 bp downstream
Tssr89805	transcription start site region 89805	1063 bp downstream
Tssr89806	transcription start site region 89806	1163 bp downstream
Tssr89807	transcription start site region 89807	1192 bp downstream