rs262389378 SNP Detail

Summary

• ID
  rs262389378
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:122822789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTCAAAG TCACTAAGAT
  TTGTCAGATA AAATCCAGGA TGTCTTGCTA AACTGGAATT CCACGTAAAG GAATGCTCCT
  TTTTACACGT GTAGATTCCG TATACTAAAT GGGGGATGGT ATCTGAATTT CAAACTTATC
  TGCCTAGCTC CTTTATTTAG TGTTATTTGG CAATCCCATT ATTCATAAAG CTGCTGGAAA
  K
  CCACAGTACA CAAGACAAAT ACAGAACGGT TGGTTAGAGA AATGAGTATC TTCGGTTGCA
  ATCTGGGAAG TTTCTCTAGA CTTTAATCTC TACAGCCCCC AGATCACAAA CATCTGGAGC
  AAAATTTGGT AAAAACACGC GCGAATACAT ATATTTAATT CATTTTGGAG ACTCACCCCA
  CCTCACACCC ACCCAGTCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382064157	MGP_WTSI_10_122423940	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262389378					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382064157	MGP_WTSI_10_122423940	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:122822789 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2309	CpG island 2309	127 bp distal
D630033A02Rik	RIKEN cDNA D630033A02 gene	329 bp upstream
Gm63655	predicted gene, 63655	1053 bp upstream
Mirlet7i	microRNA let7i	1160 bp upstream
Rr402310	regulatory region 402310	1661 bp downstream
Rr402311	regulatory region 402311	within coordinates
Rr402312	regulatory region 402312	870 bp upstream
Rr440469	regulatory region 440469	1064 bp distal
Rr440470	regulatory region 440470	563 bp distal
Rr440471	regulatory region 440471	410 bp proximal
Tssr96078	transcription start site region 96078	296 bp downstream
Tssr99656	transcription start site region 99656	1242 bp upstream
Tssr99657	transcription start site region 99657	820 bp upstream
Tssr99658	transcription start site region 99658	386 bp upstream