rs262393198 SNP Detail

Summary

• ID
  rs262393198
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:104226267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGGTATGGG GGCGGGGAGC CCAGGGCTCT
  AGGCGACTGT CGGGAGCTGG AGACTTGGAG AGCGCCGCGG CGCGGGCAAG TGCTAGTTCG
  GAAATGTGTT TCTGAGGCAG GATTCGTGGC CGCGTGGAGG GGCGGAGGGG GGGGGGCGGA
  R
  AGGGAGGGGg aagggaggga ggagagaaag aaaagaaaga aagaaaaaaa aagaaagaaa
  agaaagagag CTCGGAGTGG AGGAGAGATT GCGGAGGCTG GATCGCCATT CTCTGCTCAG
  AGGCCTCCTA AAGGATGCCA CAATGCCTCC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321240842	CHEV_4_104041675	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262393198					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:104226267 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14517	CpG island 14517	639 bp distal
Cpgi14518	CpG island 14518	69 bp distal
Dab1	disabled 1	within coordinates
Rr376948	regulatory region 376948	within coordinates
Rr596452	regulatory region 596452	1470 bp distal
Rr596453	regulatory region 596453	within coordinates
Rr596454	regulatory region 596454	407 bp distal
Rr596455	regulatory region 596455	512 bp proximal
Tssr38124	transcription start site region 38124	1710 bp downstream
Tssr38125	transcription start site region 38125	1478 bp downstream
Tssr38126	transcription start site region 38126	1446 bp downstream
Tssr38127	transcription start site region 38127	1437 bp downstream
Tssr38128	transcription start site region 38128	1428 bp downstream