rs262398423 SNP Detail

Summary

• ID
  rs262398423
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:53746681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCCACGCG CCCACCGCCC
  CGCCCCGCCC CGCCTCGCGG GCGCCTGTCG GACCCTGCCT TCCGCGTCCC GGGAGCCGCA
  CGGGACGAAC ACCTGTCGGG GCCCCGGCTC TGCGCGATGT AGGGCGCACG CCCAGCCGCC
  CGCGGGGTGG GTAGGAGAGC GCGTTCTCGC GAGGCTTAGG AAATTTCCCA CGGCCCGTGT
  W
  GTGTCTGAGC CGAGCGGTGG AAGGCGCTCG GGAGGAGGTG TAGCGTGAGA CTCCGGCTGC
  CCGCATTGCG CACATGCGCA GTGGCGCGAG CGCGCCGCGC CAATCCTGCG GCGCTCCGGA
  GCGGGTCTCG GGCGGGCTGA TCCAGTTCTC CGGGTTTTTT GTGGCTCCCT GCGGGAGGCA
  GGCAATGCAG GAGCTGGGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364963839	MGP_WTSI_5_53980578	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262398423					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364963839	MGP_WTSI_5_53980578	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:53746681 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15869	CpG island 15869	within coordinates
Rbpj	recombination signal binding protein for immunoglobulin kappa J region	within coordinates
Rr367840	regulatory region 367840	253 bp downstream
Rr611644	regulatory region 611644	616 bp distal
Rr611645	regulatory region 611645	10 bp proximal
Rr611646	regulatory region 611646	385 bp proximal
Rr611647	regulatory region 611647	1152 bp proximal
Rr611648	regulatory region 611648	1653 bp proximal
Tssr46224	transcription start site region 46224	572 bp downstream
Tssr46225	transcription start site region 46225	374 bp downstream
Tssr46226	transcription start site region 46226	90 bp upstream
Tssr46227	transcription start site region 46227	1000 bp upstream
Tssr46228	transcription start site region 46228	1014 bp upstream
Tssr46229	transcription start site region 46229	1083 bp upstream
Tssr46230	transcription start site region 46230	1114 bp upstream
Tssr46231	transcription start site region 46231	1317 bp upstream
Tssr46232	transcription start site region 46232	1334 bp upstream
Tssr46233	transcription start site region 46233	1382 bp upstream
Tssr46234	transcription start site region 46234	1720 bp upstream
Tssr46235	transcription start site region 46235	1894 bp upstream
Tssr46236	transcription start site region 46236	1909 bp upstream
Tssr51023	transcription start site region 51023	74 bp upstream
Tssr51024	transcription start site region 51024	839 bp downstream
Tssr51025	transcription start site region 51025	1233 bp downstream