rs262400150 SNP Detail

Summary

• ID
  rs262400150
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138101956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGAGCAG ACGTTAGCCG
  GCTTAGTACC AGGGATTTCT TTGGAAACGA GAGGAGTGAA CATCAGGAAA AAAATAAAAT
  TGAATTCTGA TACAATTAAC TATTTTCCCC ATTTAAAAGT ATCTTAGATT AAACACTACA
  AGGAGAAATG CCATCTAGCT GTAACTTGAT AATCAACTCA TGTCTCAAAG AGAAACTACT
  Y
  CAGAAATAAT TATTGACCAG ACCAGATATG TAAGAAGGAC TGAACCTTCA GTAAGCAGTG
  CCTGCCTGGT CACCCTGTCC TGAAGGACAC AGCATTTGTA GGAATTTTAT GAACTGTAAC
  ACACGTCTAC CTTTTCAAGG CTGTACTCTG TACCCATCAC CCAGGAAGGG CGGTGGCTCT
  ACCAGAATTT CCACAGCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351608830	MGP_WTSI_1_140070795	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262400150					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351608830	MGP_WTSI_1_140070795	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138101956 () rs orientation: forward

Symbol	Name	Function Class
Ptprc	protein tyrosine phosphatase receptor type C	within coordinates
Rr396335	regulatory region 396335	1009 bp upstream
Rr396336	regulatory region 396336	1970 bp upstream
Rr419676	regulatory region 419676	1084 bp distal
Rr419677	regulatory region 419677	within coordinates
Rr419678	regulatory region 419678	1039 bp proximal
Tssr233	transcription start site region 233	1400 bp downstream
Tssr9150	transcription start site region 9150	1918 bp downstream
Tssr9151	transcription start site region 9151	1903 bp downstream
Tssr9152	transcription start site region 9152	1487 bp downstream
Tssr9153	transcription start site region 9153	229 bp upstream
Tssr9154	transcription start site region 9154	1410 bp upstream
Tssr9155	transcription start site region 9155	1473 bp upstream
Tssr14018	transcription start site region 14018	64 bp downstream
Tssr14019	transcription start site region 14019	93 bp downstream
Tssr14020	transcription start site region 14020	125 bp downstream
Tssr14021	transcription start site region 14021	963 bp downstream
Tssr14022	transcription start site region 14022	1020 bp downstream
Tssr14023	transcription start site region 14023	1065 bp downstream
Tssr14024	transcription start site region 14024	1408 bp downstream
Tssr14025	transcription start site region 14025	1435 bp downstream
Tssr14026	transcription start site region 14026	1453 bp downstream
Tssr14027	transcription start site region 14027	1474 bp downstream
Tssr14028	transcription start site region 14028	1500 bp downstream
Tssr14029	transcription start site region 14029	1524 bp downstream
Tssr14030	transcription start site region 14030	1678 bp downstream
Tssr14031	transcription start site region 14031	1695 bp downstream