rs262401777 SNP Detail

Summary

• ID
  rs262401777
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:36649934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCACTGG ATGCTCTCAC
  TGAGGACCTG GGTTCAAATC CAAGCCAACA CAGGGTGGCT CACAGCTATC TGTAATTCAT
  GTTGTAGGGG ATCTGATGCC CCCTCTGGCC TCCACCAGCA GTGCATGCAC ATGGTACACA
  GACCCACAAG CAGGCAAAAC ACATACACAT AAATAAAAAA ATGTTTAAAA ACTCAAAAAA
  W
  TAAAAGAAAA GTTCTTAAAA CGTAGTTAAA CGTGAAGGCT ACGAGGTAGG AACAATTATT
  TTAAAAATCA TTTAAAGATT AGTACCCAGG GCTGAAAAGA TGGTTAAGGG TACAAACTGC
  TCTTGAAGAG GACCCAGGTT TAGTTCCTAG CACCCATGTT CAGTGGTCCA GAGCCGCGTG
  AAACCCCAGT TCCAAGGAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	LP/J	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	RIIIS/J	SPRET/EiJ	ZALENDE/EiJ
ss371017997	MGP_WTSI_7_37735528	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	LP/J	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	RIIIS/J	SPRET/EiJ	ZALENDE/EiJ
rs262401777					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371017997	MGP_WTSI_7_37735528	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:36649934 () rs orientation: forward

Symbol	Name	Function Class
Gm72473	predicted gene, 72473	937 bp upstream
Rr170674	regulatory region 170674	335 bp distal