rs262402040 SNP Detail

Summary

• ID
  rs262402040
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90183769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCGCGAGG GGCTGCACGT
  GCTGACGGGA GAAAAGGTGA GCTGGGGTGC GCGGGCCTGG CGGGAGGACC CGGGAGCACT
  GTCCCGCGAG CACTCAGCCT GGCTCTCCAA CCCAGTGTGG CTAGACGCAC GCTCAGGCTC
  TCCTAGTGGG CCACCGGGCA CCTACTGATG GATGATGGTG GTGATGGGCT CACGTTCGTG
  R
  GGTGGGGTAC CCGGGCAGAT AGATGTACCC GCGAAGCTAC CCCGCACCGT CTTTCTGTTT
  TGTTTTGGAA GGGTGCCGCC TGGCGGACGC CAGGGAAGGG AGGGGAGAGG TGGCGGTGGA
  GGGTCCTGCG GTAGGGGCAT GGATCAGTGC AGAGGCGGGA ACTAGATCCA GGCTGGGGTT
  CAGCTTTGCC TGTGGAATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397293394	MGP_WTSI_16_90387126	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262402040					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397293394	MGP_WTSI_16_90387126	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90183769 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8424	CpG island 8424	within coordinates
Gm60085	predicted gene, 60085	870 bp downstream
Hunk	hormonally upregulated Neu-associated kinase	within coordinates
Rr519119	regulatory region 519119	1752 bp distal
Rr519120	regulatory region 519120	858 bp distal
Rr519121	regulatory region 519121	366 bp distal
Rr519122	regulatory region 519122	70 bp proximal
Tssr139286	transcription start site region 139286	996 bp downstream
Tssr139287	transcription start site region 139287	937 bp downstream
Tssr139288	transcription start site region 139288	912 bp downstream
Tssr139289	transcription start site region 139289	858 bp downstream
Tssr139290	transcription start site region 139290	829 bp downstream
Tssr139291	transcription start site region 139291	427 bp downstream