rs262407264 SNP Detail

Summary

• ID
  rs262407264
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:76303115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCGCATT CCTCATTACA
  CCAAATGCTG TCTTTTTTTC TCTTTCACCC CGCCGGCTTC ACTTCCAAGG TATCGCACAG
  GCAAGGCAAG CGCCGCACCA CTCAGCTACT ACGCCAGCGC TCGCTTGCTC TACCCTTTAA
  CAGCCTACCT ATCCGTCCTG GCGCTAAAGT TACTTTTCAG TTTGGCTCTT GTGTGCTGAC
  M
  CTATTCCATA TTCCGTCAGA CCACCTGTTC TGGCCGTGCA GATTTAAATG CTTAACTAGT
  GGGAATGTTT GCCAAGTGTC GTCCCAGAGA GTAGCACCCT TTTGCTGTTT GGGAGAGAGG
  GCTGGGAATT GAGCCCCTAA GTGTGGAGCC CGAAAGTGTG CATAACATCT GGGCTACATT
  CCTTGCTTTT TGTTTAGGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324104771	CHEV_12_77357328	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262407264					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76303115 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4777	CpG island 4777	674 bp distal
Gm47525	predicted gene, 47525	604 bp upstream
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	Intron
Rr403350	regulatory region 403350	995 bp downstream
Rr468112	regulatory region 468112	918 bp distal
Rr468113	regulatory region 468113	114 bp distal
Tssr113934	transcription start site region 113934	1102 bp downstream
Tssr113935	transcription start site region 113935	1084 bp downstream
Tssr113936	transcription start site region 113936	1034 bp downstream
Tssr113937	transcription start site region 113937	1004 bp downstream
Tssr113938	transcription start site region 113938	972 bp downstream
Tssr113939	transcription start site region 113939	905 bp downstream
Tssr113940	transcription start site region 113940	869 bp downstream
Tssr113941	transcription start site region 113941	847 bp downstream
Tssr116711	transcription start site region 116711	1284 bp upstream
Tssr116712	transcription start site region 116712	1231 bp upstream