rs262417976 SNP Detail

Summary

• ID
  rs262417976
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19241989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCTTATA GCTAACTTGA
  CACAGACTGA TCGTATTTTC ATGACTAGGT TATCTGAAAT CTAGAATAAC CCTTCATTAA
  AAACTACGCA CACCAATTAG GCAGACTTTG AGGCGGGGGA ACTGAAGGCA GGAAAAGTCT
  TCACTCCCTC TGAGCCGCGC CTTCCACTCC TCCAGAACAT ACGTCCGGGA TTTGAGGCCC
  R
  AAACAGATCG CCCTGGCAGA CAAAGTCCCC ACAGAGCGTG GGTTGAGAAG GGCTCGACAC
  AGGCTAGGCT AGGCTAGGCT AAGGACCTAG CTCCTTTCAG CGGGCACACA TTTGAGACTT
  CACTCGGAAT GTGGGTATTC CTACACCCAA AAGGGGCGAA GTTTACCAAC AAAAATAACA
  GGGGCAGAAG CACCCAAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357150174	MGP_WTSI_3_19087825	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262417976					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357150174	MGP_WTSI_3_19087825	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19241989 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13001	CpG island 13001	within coordinates
Gm65217	predicted gene, 65217	1650 bp downstream
Mtfr1	mitochondrial fission regulator 1	within coordinates
Rr397614	regulatory region 397614	161 bp upstream
Rr573951	regulatory region 573951	468 bp distal
Rr573952	regulatory region 573952	within coordinates
Rr573953	regulatory region 573953	296 bp proximal
Rr573954	regulatory region 573954	1422 bp proximal
Rr573955	regulatory region 573955	1939 bp proximal
Tssr28500	transcription start site region 28500	509 bp downstream
Tssr28501	transcription start site region 28501	474 bp downstream
Tssr28502	transcription start site region 28502	463 bp downstream
Tssr28503	transcription start site region 28503	452 bp downstream
Tssr28504	transcription start site region 28504	260 bp upstream
Tssr28505	transcription start site region 28505	274 bp upstream
Tssr28506	transcription start site region 28506	287 bp upstream
Tssr28507	transcription start site region 28507	389 bp upstream
Tssr28508	transcription start site region 28508	401 bp upstream
Tssr28509	transcription start site region 28509	463 bp upstream