rs262419773 SNP Detail

Summary

• ID
  rs262419773
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:121317337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTCTAATA GAGGGGTTAC
  CCCCTGTCTT AGTCAGGGTT TCTATTCCTG CACAAACATC ATGGCCAAGA AGCAAGTTGG
  GGAGGAAAGG GTTTATTCGG CTTACACTTC CATGCTGCTG TTCATCACCA AGGAAGTCAG
  GACTGGAACT CAAGCAGGTC AGGAAGCAGG AGCTGATGCA GAGGCCATGA AGGGATGTTC
  Y
  TTACTGGCTT GCCTCCCCTG GCTTGCTCAG CCTGCTCTCT TATAGAACCC AAGATTACCA
  GCCCAGAGAT GGTCCCACCC ACAAGGGGCC TTTCCCCCTT GATTACTAAT TGAGAAAATG
  CCTTACAGTT GGATCTCATG GAGGCATTTC CTCAAGTGAA GCTCCTTTCT CTGTGATAAC
  TCCAATTGTG TCAAGTTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376274043	MGP_WTSI_8_123114498	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262419773					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376274043	MGP_WTSI_8_123114498	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:121317337 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21156	CpG island 21156	925 bp distal
Gins2	GINS complex subunit 2	1523 bp upstream
Gm10614	predicted gene 10614	within coordinates
Rr401181	regulatory region 401181	1360 bp downstream
Rr671590	regulatory region 671590	1073 bp distal
Rr671591	regulatory region 671591	1061 bp distal
Rr671592	regulatory region 671592	158 bp distal
Rr671593	regulatory region 671593	1122 bp proximal
Tssr83202	transcription start site region 83202	1548 bp upstream
Tssr83203	transcription start site region 83203	1530 bp upstream
Tssr83204	transcription start site region 83204	1518 bp upstream
Tssr83205	transcription start site region 83205	1508 bp upstream