rs262422822 SNP Detail

Summary

• ID
  rs262422822
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:31954960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTGGACA GTTTAGGGGT
  AGTGTGTGCG CTGTGGCCTG TTGCTGCTTC CAGTATCCGG ACCTCAACCA GCTGGGAGCC
  AGTGTTTGTG GAGGACCCAG AGGACATGGA GGATGGCCAG GGGACACAAA GCCACAAAAA
  GCACTCCAGC TTCTAGAAGT GTCTGCAAAC CCAAGAGCTG AACAGCCCCT GGACACCCCC
  S
  CACCCCCAGC GAGTCTCCAC CAAGCCGTGG CTGTGCTTCC TTTGTGGCCT CATGGCTGAT
  CCTACAGTGA GTTTCTGGCT CTTCTGGGAT CGACTAGGGC AGAGGCTCGG CGGCGGAGGG
  ACAGCTGTCA CAGCAGCAGG CAAGCAGAGA GCCTCTGTGC ACCTGCTTCC TGGAACCACG
  CTCGGCAGTG GCTTGCCCAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353550494	MGP_WTSI_2_31920468	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262422822					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353550494	MGP_WTSI_2_31920468	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31954960 () rs orientation: forward

Symbol	Name	Function Class
Fam78a	family with sequence similarity 78, member A	within coordinates
Gm16534	predicted gene 16534	37 bp upstream
Rr367161	regulatory region 367161	1605 bp downstream
Rr367162	regulatory region 367162	20 bp upstream
Rr554785	regulatory region 554785	795 bp distal
Rr554786	regulatory region 554786	351 bp distal
Rr554787	regulatory region 554787	within coordinates
Rr554788	regulatory region 554788	1094 bp proximal
Tssr17240	transcription start site region 17240	1603 bp downstream
Tssr23448	transcription start site region 23448	1689 bp upstream
Tssr23449	transcription start site region 23449	116 bp downstream
Tssr23450	transcription start site region 23450	141 bp downstream
Tssr23451	transcription start site region 23451	408 bp downstream
Tssr23452	transcription start site region 23452	465 bp downstream
Tssr23453	transcription start site region 23453	490 bp downstream