rs262425563 SNP Detail

Summary

• ID
  rs262425563
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:59788576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTAAAAG TGTGCACCAC
  CATGCCTGGC TGCAGGACCA TTTTAACTAA AACAAAAATA AAAGGACTGA GCGTGGAATA
  CACACCCATC ATCCTGTCAC TTAGGTAGAT CAGTTCACGA GGCAGGAAGA TCAGTTCAAA
  GGCCAACTTT GGCTACATGG TCAGTTTGAG GCCAGCCTGG GAGACTGCCT TAGGCAAAAC
  A
  GAAGAAAAAA ATAGTAACAT TAACTGCAAG AAATGCCTGC AGGATACCTG GGATCTCAAG
  ATTTAGGGGA TGAAGGCAGC AAAGTCAATT CAAGGCCTTA GCTGCACAGT GAGTTCCGAG
  GTCAACCAGG CTACACGAGA GCTTATCTCA AAAAGCAAAA CAAAAAAGTG TCAGCCCTGG
  ATTCCTGACA TCGCCAGAAA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324357474	CHEV_13_59742123	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262425563					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:59788576 () rs orientation: forward

Symbol	Name	Function Class
Golm1	golgi membrane protein 1	within coordinates
Rr481236	regulatory region 481236	1021 bp distal
Rr481237	regulatory region 481237	1785 bp proximal
Tssr4093	transcription start site region 4093	525 bp upstream
Tssr122874	transcription start site region 122874	590 bp upstream
Tssr122875	transcription start site region 122875	573 bp upstream