rs262433558 SNP Detail

Summary

• ID
  rs262433558
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76702516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGCTGGTC CAGTGCGCTG
  CGGCCGCGCG TCCCCCGTCA CCAAGCGCAA CCCCCCGCCT CCGACTCCGC CCCCGCGAGG
  ATGGTGGCGC CGCCAGGGGG CGCCGCCCGC GAGGCTGCAA TGCGCCTGCG CCACCGCGCA
  GCCCCTCGGG AGCTCCGAGG GAGCCTTGCC TCTGTCGGAG GCCCCGCCCC CGATGCCGCG
  Y
  TAGCCGGCCG TTCCGCTCTC ACCTGTACCC GCCCACTTCT GGAGGTCTGG GTCACCTCAG
  GTGTGTCCTA ACGTGGGTGT GGCGTGACTC TATTAGTTCT AGCCCTGCTG GGGTTCCTAA
  GCTTGAGATA TACCTCTTCC TTGACTCTGG AAAGGTAGCT ATTGTCTAAA ATACTCTGCG
  TATTCCATGT TTGTAACTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394621655	MGP_WTSI_15_76648746	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262433558					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394621655	MGP_WTSI_15_76648746	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76702516 () rs orientation: forward

Symbol	Name	Function Class
Arhgap39	Rho GTPase activating protein 39	150 bp upstream
Cpgi7256	CpG island 7256	within coordinates
Gm41350	predicted gene, 41350	within coordinates
Gm62667	predicted gene, 62667	1070 bp downstream
Rr390937	regulatory region 390937	1284 bp upstream
Rr404466	regulatory region 404466	within coordinates
Rr504853	regulatory region 504853	331 bp distal
Rr504854	regulatory region 504854	462 bp distal
Rr504855	regulatory region 504855	44 bp distal
Rr504856	regulatory region 504856	94 bp distal
Rr504857	regulatory region 504857	within coordinates
Rr504858	regulatory region 504858	26 bp proximal
Tssr131826	transcription start site region 131826	22 bp downstream
Tssr135056	transcription start site region 135056	1283 bp upstream
Tssr135057	transcription start site region 135057	142 bp upstream