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rs262437622 SNP Detail
Summary
  • ID
    rs262437622
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr7:44128902 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          GCATGTGCCA CCATGCCCGG CTCATCTCAT TTTCTTATTC
TCCTTCCTAC TTCTCCATTG CTTCCTCTTT CCCCTCTCTC CTGCCTTTTC ATTTACTATT
S
TTTTCCCCTT CTCCTCTTCT TCTTCAATCT CCTGTCCTCT TCCTTACCAC TCCTCTTTTC
CTTCTCCATC TTCTTATTCA TAGTCCTCGT TCCCCCCAT                       

S = C/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156116 MGP_WTSI_7_51734848 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C G G C G G C C C C C C C C C C G C C C C C C C G C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs262437622 SNP C C C C C C C C C C C C C C C C C C C C C C C G G C G G C C C C C C C C C C G C C C C C C C G C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156116 MGP_WTSI_7_51734848 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44128902 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2226 transcription start site region 2226 1533 bp downstream
Tssr2227 transcription start site region 2227 458 bp downstream
Tssr2228 transcription start site region 2228 600 bp upstream
Tssr2229 transcription start site region 2229 876 bp upstream
Tssr2230 transcription start site region 2230 1055 bp upstream
Tssr2231 transcription start site region 2231 1188 bp upstream
Tssr2232 transcription start site region 2232 1363 bp upstream
Tssr2233 transcription start site region 2233 1396 bp upstream
Tssr2234 transcription start site region 2234 1555 bp upstream
Tssr66246 transcription start site region 66246 1990 bp downstream
Tssr66247 transcription start site region 66247 1943 bp downstream
Tssr66248 transcription start site region 66248 1902 bp downstream
Tssr66249 transcription start site region 66249 1879 bp downstream
Tssr66250 transcription start site region 66250 1860 bp downstream
Tssr66251 transcription start site region 66251 1835 bp downstream
Tssr66252 transcription start site region 66252 1804 bp downstream
Tssr66253 transcription start site region 66253 1776 bp downstream
Tssr66254 transcription start site region 66254 1728 bp downstream
Tssr66255 transcription start site region 66255 1701 bp downstream
Tssr66256 transcription start site region 66256 1652 bp downstream
Tssr66257 transcription start site region 66257 1641 bp downstream
Tssr66258 transcription start site region 66258 1598 bp downstream
Tssr66259 transcription start site region 66259 1562 bp downstream
Tssr66260 transcription start site region 66260 1455 bp downstream
Tssr66261 transcription start site region 66261 1434 bp downstream
Tssr66262 transcription start site region 66262 1427 bp downstream
Tssr66263 transcription start site region 66263 1415 bp downstream
Tssr66264 transcription start site region 66264 1391 bp downstream
Tssr66265 transcription start site region 66265 1348 bp downstream
Tssr66266 transcription start site region 66266 1331 bp downstream
Tssr66267 transcription start site region 66267 1294 bp downstream
Tssr66268 transcription start site region 66268 1278 bp downstream
Tssr66269 transcription start site region 66269 1242 bp downstream
Tssr66270 transcription start site region 66270 1207 bp downstream
Tssr66271 transcription start site region 66271 1175 bp downstream
Tssr66272 transcription start site region 66272 1123 bp downstream
Tssr66273 transcription start site region 66273 1105 bp downstream
Tssr66274 transcription start site region 66274 1100 bp downstream
Tssr66275 transcription start site region 66275 1080 bp downstream
Tssr66276 transcription start site region 66276 1060 bp downstream
Tssr66277 transcription start site region 66277 1040 bp downstream
Tssr66278 transcription start site region 66278 996 bp downstream
Tssr66279 transcription start site region 66279 951 bp downstream
Tssr66280 transcription start site region 66280 929 bp downstream
Tssr66281 transcription start site region 66281 889 bp downstream
Tssr66282 transcription start site region 66282 872 bp downstream
Tssr66283 transcription start site region 66283 858 bp downstream
Tssr66284 transcription start site region 66284 846 bp downstream
Tssr66285 transcription start site region 66285 832 bp downstream
Tssr66286 transcription start site region 66286 793 bp downstream
Tssr66287 transcription start site region 66287 757 bp downstream
Tssr66288 transcription start site region 66288 732 bp downstream
Tssr66289 transcription start site region 66289 650 bp downstream
Tssr66290 transcription start site region 66290 612 bp downstream
Tssr66291 transcription start site region 66291 586 bp downstream
Tssr66292 transcription start site region 66292 554 bp downstream
Tssr66293 transcription start site region 66293 532 bp downstream
Tssr66294 transcription start site region 66294 508 bp downstream
Tssr66295 transcription start site region 66295 243 bp downstream
Tssr66296 transcription start site region 66296 72 bp downstream
Tssr66297 transcription start site region 66297 48 bp downstream
Tssr66298 transcription start site region 66298 within coordinates
Tssr66299 transcription start site region 66299 24 bp upstream
Tssr66300 transcription start site region 66300 31 bp upstream
Tssr66301 transcription start site region 66301 55 bp upstream
Tssr66302 transcription start site region 66302 69 bp upstream
Tssr66303 transcription start site region 66303 110 bp upstream
Tssr66304 transcription start site region 66304 118 bp upstream
Tssr66305 transcription start site region 66305 128 bp upstream
Tssr66306 transcription start site region 66306 162 bp upstream
Tssr66307 transcription start site region 66307 219 bp upstream
Tssr66308 transcription start site region 66308 272 bp upstream
Tssr66309 transcription start site region 66309 293 bp upstream
Tssr66310 transcription start site region 66310 331 bp upstream
Tssr66311 transcription start site region 66311 408 bp upstream
Tssr66312 transcription start site region 66312 424 bp upstream
Tssr66313 transcription start site region 66313 445 bp upstream
Tssr66314 transcription start site region 66314 453 bp upstream
Tssr66315 transcription start site region 66315 473 bp upstream
Tssr66316 transcription start site region 66316 532 bp upstream
Tssr66317 transcription start site region 66317 544 bp upstream
Tssr66318 transcription start site region 66318 589 bp upstream
Tssr66319 transcription start site region 66319 612 bp upstream
Tssr66320 transcription start site region 66320 639 bp upstream
Tssr66321 transcription start site region 66321 657 bp upstream
Tssr66322 transcription start site region 66322 677 bp upstream
Tssr66323 transcription start site region 66323 723 bp upstream
Tssr66324 transcription start site region 66324 752 bp upstream
Tssr66325 transcription start site region 66325 782 bp upstream
Tssr66326 transcription start site region 66326 823 bp upstream
Tssr66327 transcription start site region 66327 837 bp upstream
Tssr66328 transcription start site region 66328 853 bp upstream
Tssr66329 transcription start site region 66329 892 bp upstream
Tssr66330 transcription start site region 66330 911 bp upstream
Tssr66331 transcription start site region 66331 925 bp upstream
Tssr66332 transcription start site region 66332 946 bp upstream
Tssr66333 transcription start site region 66333 994 bp upstream
Tssr66334 transcription start site region 66334 1006 bp upstream
Tssr66335 transcription start site region 66335 1015 bp upstream
Tssr66336 transcription start site region 66336 1024 bp upstream
Tssr66337 transcription start site region 66337 1042 bp upstream
Tssr66338 transcription start site region 66338 1098 bp upstream
Tssr66339 transcription start site region 66339 1149 bp upstream
Tssr66340 transcription start site region 66340 1194 bp upstream
Tssr66341 transcription start site region 66341 1239 bp upstream
Tssr66342 transcription start site region 66342 1301 bp upstream
Tssr66343 transcription start site region 66343 1333 bp upstream
Tssr66344 transcription start site region 66344 1478 bp upstream
Tssr66345 transcription start site region 66345 1511 bp upstream
Tssr66346 transcription start site region 66346 1567 bp upstream
Tssr66347 transcription start site region 66347 1605 bp upstream
Tssr66348 transcription start site region 66348 1646 bp upstream
Tssr66349 transcription start site region 66349 1670 bp upstream
Tssr66350 transcription start site region 66350 1698 bp upstream
Tssr66351 transcription start site region 66351 1706 bp upstream
Tssr66352 transcription start site region 66352 1742 bp upstream
Tssr66353 transcription start site region 66353 1816 bp upstream
Tssr66354 transcription start site region 66354 1830 bp upstream
Tssr66355 transcription start site region 66355 1857 bp upstream
Tssr66356 transcription start site region 66356 1874 bp upstream
Tssr66357 transcription start site region 66357 1888 bp upstream
Tssr66358 transcription start site region 66358 1900 bp upstream
Tssr66359 transcription start site region 66359 1926 bp upstream
Tssr66360 transcription start site region 66360 1938 bp upstream
Tssr66361 transcription start site region 66361 1964 bp upstream
Tssr66362 transcription start site region 66362 1996 bp upstream
Tssr72199 transcription start site region 72199 1995 bp upstream
Tssr72200 transcription start site region 72200 1037 bp upstream
Tssr72201 transcription start site region 72201 527 bp upstream
Tssr72202 transcription start site region 72202 315 bp downstream
Tssr72203 transcription start site region 72203 701 bp downstream
Tssr72204 transcription start site region 72204 1297 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory