rs262446039 SNP Detail

Summary

• ID
  rs262446039
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129856153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGCCCAT CGAGATTGGC
  ACTATCAGGA GATGTGGCCT TGATGGAAGA ATTATCTCAC TGTGTTTTGA GGTTTTGAGG
  TCTCATATGC TGAAGCTACA CAAGTATGGT GCAGTCTCCT GCTGCTGCCT GCAGATCAAG
  ATGTAGAATC TCCGCTCCTC CAGCACCATA ATCTGCTTGC AGGCTGCTAT CCTTCCCACC
  M
  TGATGATAAT GGACTAAACC TCAGAAACTG GAAGCCAGCC CCAAATTAAA TATTTCTCTT
  TATAAGAGTT GCTGTGGTCA TGGTGTCTCT TCACAGAAAT GAAACCCTAA GACACCCTCC
  ATCAAAAGGA GTTGTTTCTC ATACCTCTAG CAGGAGCGAC TATATATATA TAACTACCTG
  TGGTGTCCAT TAGCATATCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359703496	MGP_WTSI_3_129765422	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	A	A	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262446039					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	A	A	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359703496	MGP_WTSI_3_129765422	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129856153 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13821	CpG island 13821	1119 bp distal
Rr585124	regulatory region 585124	1608 bp distal
Rr585125	regulatory region 585125	1612 bp distal
Rr585126	regulatory region 585126	1107 bp distal
Sec24b	SEC24 homolog B, COPII coat complex component	951 bp upstream
Tssr31665	transcription start site region 31665	1713 bp downstream
Tssr35653	transcription start site region 35653	1771 bp upstream
Tssr35654	transcription start site region 35654	1746 bp upstream
Tssr35655	transcription start site region 35655	1678 bp upstream
Tssr35656	transcription start site region 35656	1655 bp upstream
Tssr35657	transcription start site region 35657	1639 bp upstream
Tssr35658	transcription start site region 35658	1474 bp upstream
Tssr35659	transcription start site region 35659	996 bp upstream
Tssr35660	transcription start site region 35660	919 bp upstream