rs262456775 SNP Detail

Summary

• ID
  rs262456775
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88193390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCGCCCG CTGCGGTGAC
  AGACAATACT TCTGATAAAG TCTGTTGAAT TCTTTTTTAA GCTCATCATA GTTATCCTTC
  CCACAGCCTG GAGAGCCTAT GCTTGGTGCT GAAATAGCTG TACTGGGCCA CACTGCCTTA
  CCAGTAGGTT CAGAATTGTG CTCTTGAAGG CCAGAGCTCA GCTGAGAATG GCTGGGGCTC
  Y
  GTGACGGGCT GCCCTCTGGA GAGGGACAGC TCCTTAGAAG ACAGCTCTTT GTTTTGACAG
  ACTTTCCATT TCCCCTCAGG TCTTCTAAAG CTTCACCTGG CCTTTCTGTC TTTTCTCTGC
  CGAAAGGTGA ACTGGGCCTG CAGGTTTCTA CATCCTGACG GCTGCCTGGG CTCTTAGAAC
  CACTTCTGTA CACATCGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C58/J	DBA/1J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss350399241	MGP_WTSI_1_90162243	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C58/J	DBA/1J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs262456775					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350399241	MGP_WTSI_1_90162243	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88193390 () rs orientation: forward

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	within coordinates
Rr18063	regulatory region 18063	811 bp proximal
Rr28029	regulatory region 28029	1356 bp proximal
Rr28030	regulatory region 28030	1862 bp proximal
Rr35066	regulatory region 35066	within coordinates
Tssr12870	transcription start site region 12870	803 bp upstream