rs262457585 SNP Detail

Summary

• ID
  rs262457585
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44500349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAGGACC GAAGCTGTGT
  CATCTTGGAT CAGTCACTTT CTTGCCCTTA GCCATAATCC TAAACTTCCA GCCTCCTTTA
  TTAGCTAGGA GAGGTGGAAG GTGTGTGTAG GAGTTGCTGG GCGCCTTTTA AAGCTGTAGG
  TAGGACTTTG AGGCCCAGCA GACAGTAGTG TCAAAGCACT GCAGCTTTCT CCCTCTCCAT
  R
  GAAAGATGGG ATGGGGGGAT GCAGTCTAAT GAGGTAGGCA GGGTGGAGCG CAGTATTGGC
  AGAGAAGGCT CTAGACACAG ACTGCTCTTC TCAGTGGTCA GCTCTGCCAG TATAACAGTC
  AAGAGCCTGG ATTCAGAGCT TCAGGCTGTA AAGTGGGGTG TCCATTGCTG ATTCATGGAG
  GAAGTGAGGG GTTGCTTAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371164938	MGP_WTSI_7_52106295	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262457585					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371164938	MGP_WTSI_7_52106295	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44500349 () rs orientation: forward

Symbol	Name	Function Class
Akt1s1	AKT1 substrate 1	within coordinates
Cpgi18996	CpG island 18996	268 bp distal
Cpgi18997	CpG island 18997	1711 bp proximal
Mir707	microRNA 707	1154 bp downstream
Rr167667	regulatory region 167667	within coordinates
Tssr66435	transcription start site region 66435	1811 bp downstream
Tssr66436	transcription start site region 66436	1630 bp downstream
Tssr66437	transcription start site region 66437	1296 bp downstream
Tssr66438	transcription start site region 66438	899 bp downstream
Tssr66439	transcription start site region 66439	533 bp downstream
Tssr66440	transcription start site region 66440	511 bp downstream
Tssr66441	transcription start site region 66441	1851 bp upstream
Tssr72237	transcription start site region 72237	1058 bp upstream