rs262460342 SNP Detail

Summary

• ID
  rs262460342
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110974647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGCATCT GGTACCACCT
  AGCTTGTGTT TTATTTAATT TTTTTTGAAG TATAATTTTC TCTCTCCCTT CCTTCCTTCC
  TTTTAAATCT ATTTTTGAGA CTTGATCTCC TTTTGTGTTG TGCTGACTGG CTGGGAGCTC
  ACTGTGTAGA CATGGTTAAC CACACCCGGT AAAGTGAACT TTTAATATTC AGTCAGCACA
  M
  ATTAATTAAA GATCTATTAT GTATGGACAC TGCTACATTT AGAGGGTGTA TATAGTTCTA
  CCATAGAGCT CAGATTCAAA AGGGGAAATA GGCACTGAAG GCCACATAAT GGATTCTTCC
  TCAAAGTTCA GATACTTAGC AGTTCCTTTT TGTCTTGAAA ACTGGTTATC TGTGTCTGCT
  ATAGTCACTG GGATTCTTAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323195914	CHEV_9_111048083	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262460342					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110974647 () rs orientation: forward

Symbol	Name	Function Class
Lrrfip2	leucine rich repeat (in FLII) interacting protein 2	within coordinates
Rr687307	regulatory region 687307	540 bp distal
Tssr87483	transcription start site region 87483	1116 bp upstream