rs262478819 SNP Detail

Summary

• ID
  rs262478819
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:120880716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATGGTGG CTCACAACCA
  CCCGTAGTGA TATCTGACAC CCTCTTCTGG TGCATCTGAA GATAGCTACA GTGTACTTAT
  GTATAATAAT AAATACATCT TTAAAAAAAG ACACAGGGAA AGCATTCATA CACATAAAAT
  AAATTCCACA AAGTGGAGAG TGAGGAACAG ATGTGAGGAG ACACTTGGCA TTAACCTCTG
  R
  CCTCCACAGG CATCTGTACA TACATGGGTG ACAGATAGAC AGACAGACAC ACACACTGCA
  GGGGCTAGGG GAAGCTGGCA GCCCAGATTC TGAAGGCTCT GGCTTCCCTA AGCTGCTGAA
  GGATCCCCAG TAGCCCGCCA TACTGACTCT TCAACTTCGG CTTTTCAGAT CCCTCTGTTC
  CTTGCTGAGA ACTTTTTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366481597	MGP_WTSI_5_121192660	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262478819					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366481597	MGP_WTSI_5_121192660	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:120880716 () rs orientation: forward

Symbol	Name	Function Class
Oas2	2'-5' oligoadenylate synthetase 2	within coordinates
Rr619422	regulatory region 619422	233 bp distal
Rr619423	regulatory region 619423	319 bp distal
Rr619424	regulatory region 619424	146 bp distal
Tssr52959	transcription start site region 52959	905 bp downstream
Tssr52960	transcription start site region 52960	991 bp downstream
Tssr52961	transcription start site region 52961	1018 bp downstream
Tssr52962	transcription start site region 52962	1140 bp downstream
Tssr52963	transcription start site region 52963	1237 bp downstream
Tssr52964	transcription start site region 52964	1488 bp downstream
Tssr52965	transcription start site region 52965	1575 bp downstream
Tssr52966	transcription start site region 52966	1646 bp downstream
Tssr52967	transcription start site region 52967	1672 bp downstream