rs262484739 SNP Detail

Summary

• ID
  rs262484739
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:70342637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATGTCCC CAATTCGGCA
  AGAGTGGCAC CAAGGCCATC TGTTTCTACC CCACTCCTGC TTTATCTTTG GGCATTTCCT
  ATCCGTCTGC TCTCTATTTC AAGCCATCAG TCTGGCATTA CTTTTGTTGT TTTAGAGATC
  CTCACTCTAT CTCAAGCTGG TCTTGAACTT GCAGCAATTC TGCCTCAGCC CCCTAACTGC
  R
  GAGTTAGCAG CTCTGTGAAC CACCACGAGG GCAAGCTGGG CTACTGAGGA AAGCCAGCTA
  AGTGGCTCAG CTGATAAGAA CTTGCCACCA AGCTGGGCGT GGTGGTGCAT GCCTTTTTAA
  TCCCACTCGG GAGGCAGAGG CAGGCGGATT TCTGAGTTCG AGGCCAGCCT GGTCTACATA
  GTGAGTTCCA GGACAGCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375091853	MGP_WTSI_8_72413886	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	A	G	A	G	G	A	G	G	G	A	A	A	A	A	A	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	A	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262484739					SNP	G	G	G	A	G	A	G	G	A	G	G	G	A	A	A	A	A	A	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	A	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375091853	MGP_WTSI_8_72413886	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70342637 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20426	CpG island 20426	1660 bp distal
Cpgi20427	CpG island 20427	287 bp distal
Gm33746	predicted gene, 33746	1491 bp downstream
Tssr81540	transcription start site region 81540	1772 bp upstream
Tssr81541	transcription start site region 81541	1750 bp upstream
Yjefn3	YjeF N-terminal domain containing 3	within coordinates