rs262486665 SNP Detail

Summary

• ID
  rs262486665
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137046269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGGGAAC TGCAACTCTA
  TAGGTGGAAC AACAATATGA ACTAACCAGT GCCCCCCGGA GCTCGTGTCT CTAGCTGCAT
  ATGAATCAGA AGATGGTCTA GTCAGCCATC AGTGGAAAGA GAGGCCCATT GGTCGTGCAA
  ACTTTATATG CCTCAGTACA GGGGAATGCC AGGGCCAAGA AGTGGGAGGG GGAGGGGGAG
  R
  GGAGTGGGGG GGTATGGGGG ACTTTTGGAA TAGCAGTGGA AATGTAAATG AAGAAAATAT
  CTAATAAAAA TATTTAAAAA GAAAGAAAGA AATGTCTTGA AAACCTCTCT GGGCAGTAAT
  AAGAGGCCAG CTTACTTCCT CAAGAGCAGA ACGTGATCCA GTTCATACTT GTATTTGCCT
  CTAGAAGGTG GTCTTCACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359882628	MGP_WTSI_3_137003472	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	G	A	A	A	A	A	A	G	G	G	G	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262486665					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	G	A	A	A	A	A	A	G	G	G	G	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359882628	MGP_WTSI_3_137003472	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137046269 () rs orientation: forward

Symbol	Name	Function Class
Emcn	endomucin	555 bp upstream
Rr585936	regulatory region 585936	279 bp proximal
Tssr31897	transcription start site region 31897	524 bp upstream
Tssr31898	transcription start site region 31898	568 bp upstream
Tssr31899	transcription start site region 31899	595 bp upstream
Tssr31900	transcription start site region 31900	639 bp upstream
Tssr31901	transcription start site region 31901	671 bp upstream
Tssr31902	transcription start site region 31902	704 bp upstream