rs262488339 SNP Detail

Summary

• ID
  rs262488339
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:67971866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTAAAGCC ATAGTTACAA
  ACGACACAGG TGATACTGAT CTTGGGTTGT TTATGGGGTG TCCTGACTGC TCTCCTACCA
  GCTTTCTCAT TCAACTTCAT CAGTCATTCA AGTCCCAGAA AAAAAAAAAA ATCTAAAACC
  AACCAACTCA TTGAGCTTCC CTTAACCAAC TCCAGATAAA TGCCTCCCCA CACCCCAGCC
  Y
  CCGTCTGCCC CCAAACAAGC CCTCCAGAGC TCTCAAAGCA CATATGTTTA TTACTTAGAG
  GGACAGTTAC TGGGGAAAAA AAACTCACGT CTGACCGCCA GGGAGCCTCT TAATTATTAT
  TTACCTCTGG ACACACAGGG TTAGCCGCTG GTGCCTTTAG GACATTTTAG GTTGGACTCA
  ATTTACATAC ACACGACTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380752596	MGP_WTSI_10_67598784	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262488339					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380752596	MGP_WTSI_10_67598784	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:67971866 () rs orientation: forward

Symbol	Name	Function Class
Arid5b	AT-rich interaction domain 5B	within coordinates
Cpgi1679	CpG island 1679	407 bp proximal
Rr384864	regulatory region 384864	163 bp upstream
Rr433196	regulatory region 433196	1154 bp distal
Rr433197	regulatory region 433197	within coordinates
Rr433198	regulatory region 433198	498 bp proximal
Rr433199	regulatory region 433199	580 bp proximal
Tssr3230	transcription start site region 3230	689 bp downstream
Tssr3231	transcription start site region 3231	705 bp downstream
Tssr3232	transcription start site region 3232	771 bp downstream
Tssr93877	transcription start site region 93877	967 bp upstream
Tssr93878	transcription start site region 93878	1746 bp upstream
Tssr97989	transcription start site region 97989	752 bp upstream
Tssr97990	transcription start site region 97990	735 bp upstream
Tssr97991	transcription start site region 97991	535 bp downstream
Tssr97992	transcription start site region 97992	577 bp downstream
Tssr97993	transcription start site region 97993	591 bp downstream
Tssr97994	transcription start site region 97994	614 bp downstream
Tssr97995	transcription start site region 97995	648 bp downstream
Tssr97996	transcription start site region 97996	666 bp downstream
Tssr97997	transcription start site region 97997	677 bp downstream
Tssr97998	transcription start site region 97998	743 bp downstream
Tssr97999	transcription start site region 97999	1168 bp downstream
Tssr98000	transcription start site region 98000	1325 bp downstream