rs262490329 SNP Detail

Summary

• ID
  rs262490329
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45343550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cacacacac acacacacac acacacacac
  acacacacca cacacacCAA TTTTCTTTCT TGGGGCTCTT CCTGCTTCCC TCCACCCTGG
  CAGGCTGGTT TGGCTCACAG CTTTAATTAC GTTAATATTA AATATACATA AGGTGAGGAG
  Y
  GGCTTTCTCT CTCCATAGCT CTCACTCCAA CCCCCTTCCC TTTTCCATTT GTCAGGCAAG
  GAACACGGAC CAGAGCTGTG GCCACACTCA GTTGCTTTGT CCCTAACCTT GCTCCCAGGA
  ACAGCCCATT TCTCAGCCCT GCAGCCTCCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322943363	CHEV_9_45240335	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262490329					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45343550 () rs orientation: forward

Symbol	Name	Function Class
4833428L15Rik	RIKEN cDNA 4833428L15 gene	1020 bp upstream
Cpgi21692	CpG island 21692	610 bp distal
Dscaml1	DS cell adhesion molecule like 1	within coordinates
Rr383299	regulatory region 383299	209 bp downstream
Rr677921	regulatory region 677921	1949 bp distal
Rr677922	regulatory region 677922	304 bp distal
Rr677923	regulatory region 677923	within coordinates
Tssr84800	transcription start site region 84800	1873 bp downstream
Tssr84801	transcription start site region 84801	913 bp downstream
Tssr84802	transcription start site region 84802	886 bp downstream