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rs262492463 SNP Detail
Summary
  • ID
    rs262492463
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:93353840 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GAACAAGAGC TCAGGCGCGA
CAGAAAATTC CATGAGGAAG AAGAGCGCCG TCATGAGGAG TTCGAGGAAA AGCAGCTGCG
CCTCCAGGAA CCGGACAGAA GATTCCGCCG GGAACAAGAG CTCCGTCAGG AATGCGTCGA
GGAAGAGCGG CTGCGGGACA GTAAGATCCG CCGGGAGCAA GAGCTCCGCC GGGAGCGCGA
R
GAAGAGCGGC TGAGGGACAG AAAGATCCGC CGGGACCAAG AACTCCGCCA GGGACTGGAG
GAAGAGCAGC TGAGGCGCCA GGAACTTGAC AGAAAATTCC GTGAGGAACA AGAGCTCGAC
CAAGAACTGG AGGAAGAGCG GCTGCGGGAC AGAAAGATCC GCCGGGAGCA AGAGCTCCGC
CGGGAGCAAG AGCTCCGCCG                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss358876347 MGP_WTSI_3_93250455 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A G A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs262492463 SNP A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A G A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss358876347 MGP_WTSI_3_93250455 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:93353840 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi13475 CpG island 13475 within coordinates
Gm37245 predicted gene, 37245 within coordinates
Gm56800 predicted gene, 56800 1739 bp upstream
Gm66249 predicted gene, 66249 within coordinates
Tchh trichohyalin within coordinates
Tssr962 transcription start site region 962 1407 bp downstream
Tssr963 transcription start site region 963 1371 bp downstream
Tssr964 transcription start site region 964 1272 bp downstream
Tssr30365 transcription start site region 30365 1984 bp downstream
Tssr30366 transcription start site region 30366 1931 bp downstream
Tssr30367 transcription start site region 30367 1892 bp downstream
Tssr30368 transcription start site region 30368 1868 bp downstream
Tssr30369 transcription start site region 30369 1864 bp downstream
Tssr30370 transcription start site region 30370 1855 bp downstream
Tssr30371 transcription start site region 30371 1828 bp downstream
Tssr30372 transcription start site region 30372 1818 bp downstream
Tssr30373 transcription start site region 30373 1765 bp downstream
Tssr30374 transcription start site region 30374 1751 bp downstream
Tssr30375 transcription start site region 30375 1738 bp downstream
Tssr30376 transcription start site region 30376 1702 bp downstream
Tssr30377 transcription start site region 30377 1676 bp downstream
Tssr30378 transcription start site region 30378 1654 bp downstream
Tssr30379 transcription start site region 30379 1637 bp downstream
Tssr30380 transcription start site region 30380 1558 bp downstream
Tssr30381 transcription start site region 30381 1541 bp downstream
Tssr30382 transcription start site region 30382 1486 bp downstream
Tssr30383 transcription start site region 30383 1475 bp downstream
Tssr30384 transcription start site region 30384 1466 bp downstream
Tssr30385 transcription start site region 30385 1441 bp downstream
Tssr30386 transcription start site region 30386 1419 bp downstream
Tssr30387 transcription start site region 30387 1325 bp downstream
Tssr30388 transcription start site region 30388 1306 bp downstream
Tssr30389 transcription start site region 30389 1284 bp downstream
Tssr30390 transcription start site region 30390 1213 bp downstream
Tssr30391 transcription start site region 30391 1203 bp downstream
Tssr30392 transcription start site region 30392 1185 bp downstream
Tssr30393 transcription start site region 30393 1174 bp downstream
Tssr30394 transcription start site region 30394 1148 bp downstream
Tssr30395 transcription start site region 30395 1121 bp downstream
Tssr30396 transcription start site region 30396 1071 bp downstream
Tssr30397 transcription start site region 30397 1055 bp downstream
Tssr30398 transcription start site region 30398 977 bp downstream
Tssr30399 transcription start site region 30399 898 bp downstream
Tssr30400 transcription start site region 30400 449 bp downstream
Tssr30401 transcription start site region 30401 428 bp downstream
Tssr30402 transcription start site region 30402 328 bp downstream
Tssr30403 transcription start site region 30403 291 bp downstream
Tssr30404 transcription start site region 30404 840 bp upstream
Tssr30405 transcription start site region 30405 951 bp upstream
Tssr30406 transcription start site region 30406 1099 bp upstream
Tssr30407 transcription start site region 30407 1294 bp upstream
Tssr34356 transcription start site region 34356 1814 bp upstream
Tssr34357 transcription start site region 34357 1749 bp upstream
Tssr34358 transcription start site region 34358 1690 bp upstream
Tssr34359 transcription start site region 34359 1615 bp upstream
Tssr34360 transcription start site region 34360 1570 bp upstream
Tssr34361 transcription start site region 34361 1513 bp upstream
Tssr34362 transcription start site region 34362 1500 bp upstream
Tssr34363 transcription start site region 34363 1475 bp upstream
Tssr34364 transcription start site region 34364 1460 bp upstream
Tssr34365 transcription start site region 34365 1434 bp upstream
Tssr34366 transcription start site region 34366 1366 bp upstream
Tssr34367 transcription start site region 34367 1201 bp upstream
Tssr34368 transcription start site region 34368 1171 bp upstream
Tssr34369 transcription start site region 34369 1145 bp upstream
Tssr34370 transcription start site region 34370 1119 bp upstream
Tssr34371 transcription start site region 34371 976 bp upstream
Tssr34372 transcription start site region 34372 315 bp upstream
Tssr34373 transcription start site region 34373 843 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory