rs262496144 SNP Detail

Summary

• ID
  rs262496144
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:93224747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAGGTCA GGGAGCAGGA
  GCTGATGCAG AGGCCATGGA GGGATGTTCT TTACTGGCTT GCTTGCCCTG GCTTGCTCAG
  CCTGCTCTCT CATAGAACCA AGACTCCCAG CCCAGAGATG GTCACACCCA CAAGGGACCT
  TTTCCCCTTG ATCACTAATT GAGAAAATGC CTTACAGTTG TATCTCATGG AGGCATTTCC
  Y
  CAACTGAAGC TCCTTTCTCT GTGATAACTC CAGCTGTGTC AAGTTGACAC AAAACTAGCC
  AGTACAGTGC TTGTGCTTGG TCCACTTTAT AGAACTCAGG ACCCCCTGCC TCAGTAATGC
  TTGCACTCAG AGTGGGATGG GTCTTCCCAC TTTATTTAAC TTAATTAAGA CAATCCCCCA
  TAGACCAACT CAGTGTAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss365900018	MGP_WTSI_5_93505914	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	C	C	T	T	T	T	T	T	T	C	C	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs262496144					SNP	T	T	T	T	T	C	C	T	T	T	T	T	T	T	C	C	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365900018	MGP_WTSI_5_93505914	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:93224747 () rs orientation: forward

Symbol	Name	Function Class
Gm71590	predicted gene, 71590	286 bp downstream