rs262499199 SNP Detail

Summary

• ID
  rs262499199
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140428190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGGTCAG ATTCTTTACA
  ATTTTAAAAC TCAGCTCTCC CAGGGAACGC CTTCCTTGAT CCTGGAACCC GGTAAGTACC
  ATGCTTTCAG TAATTTCTTA ATCTTTCCTC TTACTTCGCC TTCCAACTGG GCAGAGATCT
  TGTTCTCCAG GTCTGTATTC TAAGCTTCTA GCACCTTTGC ATCTAGTCTT GCTTGTACTG
  R
  GGCGCGGTAA ATACGTTTTT AAAATGAAGA AAATTCCCAT CACAAGTACT TTCAAGTCCA
  CCTATGCTAA TTACTAATTT CATAGTACGT CCCCCAGCTA ATTACTAATT TCATACTACA
  CCAAACCTTT ATGTAACTTG ATCATTCTAA CAGCACCCGG CTGCACACTC TGGACGCATC
  CACGACGTAT CAAATCTACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363501323	MGP_WTSI_4_140256794	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262499199					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363501323	MGP_WTSI_4_140256794	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140428190 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15194	CpG island 15194	900 bp distal
Cpgi15195	CpG island 15195	186 bp proximal
Gm69527	predicted gene, 69527	within coordinates
Gm69529	predicted gene, 69529	409 bp downstream
Rcc2	regulator of chromosome condensation 2	within coordinates
Rr377298	regulatory region 377298	within coordinates
Rr603517	regulatory region 603517	996 bp distal
Rr603518	regulatory region 603518	328 bp distal
Rr603519	regulatory region 603519	within coordinates
Rr603520	regulatory region 603520	381 bp proximal
Rr603521	regulatory region 603521	531 bp proximal
Tssr39970	transcription start site region 39970	997 bp downstream
Tssr39971	transcription start site region 39971	924 bp downstream
Tssr39972	transcription start site region 39972	904 bp downstream
Tssr39973	transcription start site region 39973	881 bp downstream
Tssr39974	transcription start site region 39974	533 bp downstream
Tssr39975	transcription start site region 39975	394 bp downstream
Tssr39976	transcription start site region 39976	350 bp downstream
Tssr39977	transcription start site region 39977	266 bp downstream
Tssr39978	transcription start site region 39978	547 bp upstream
Tssr39979	transcription start site region 39979	568 bp upstream
Tssr39980	transcription start site region 39980	587 bp upstream
Tssr39981	transcription start site region 39981	631 bp upstream
Tssr39982	transcription start site region 39982	643 bp upstream
Tssr39983	transcription start site region 39983	729 bp upstream
Tssr39984	transcription start site region 39984	954 bp upstream
Tssr39985	transcription start site region 39985	1016 bp upstream
Tssr39986	transcription start site region 39986	1057 bp upstream
Tssr39987	transcription start site region 39987	1202 bp upstream
Tssr39988	transcription start site region 39988	1298 bp upstream
Tssr39989	transcription start site region 39989	1337 bp upstream
Tssr44270	transcription start site region 44270	1229 bp upstream
Tssr44271	transcription start site region 44271	1196 bp upstream
Tssr44272	transcription start site region 44272	1056 bp upstream
Tssr44273	transcription start site region 44273	190 bp downstream
Tssr44274	transcription start site region 44274	1519 bp downstream