rs262506525 SNP Detail

Summary

• ID
  rs262506525
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17693933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTCCTGGA AATCTTGATT
  GCAACCGAAT TCTGACTCCA CTTTAAGGTA GACCTAGGAA CGCTTTGGGC CTCAGTTTCC
  CTCCGTCTAT CACCCCAGGA CCTGGCAACT GTTGCAGGCT CCCCCCCCAG ACATTACAAA
  GTGTGTGGAG CACGCCCGGC TCTCGGAAGC GCTCTACACC CGCGAGCTGT TACGTCAGTG
  R
  GTCCCTCGGC GGCGCCCGGG CTGTCCTCCT AAAATACTAG TACAAGAAGT ATAAATGGCC
  CGGGAGAGTG CAGGGACCGG GCCCACGTGA CCGCTCCACG AAGGCCACCG GCGGGGGCTC
  GGAGCGCAGG CCGCGCGCTT TCCCGCCGCA TCCGGGCGCC GGGCGAGCTC CGGGGACGCC
  GGGCCCTGGC GGCGGCGGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367532692	MGP_WTSI_6_17643934	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	A	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262506525					SNP	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	A	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367532692	MGP_WTSI_6_17643934	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17693933 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	within coordinates
Gm55211	predicted gene, 55211	377 bp downstream
Gm55212	predicted gene, 55212	3 bp upstream
Gm55213	predicted gene, 55213	968 bp upstream
Gm55215	predicted gene, 55215	1420 bp upstream
Rr626833	regulatory region 626833	990 bp distal
Rr626834	regulatory region 626834	within coordinates
Rr626835	regulatory region 626835	610 bp proximal
Rr626836	regulatory region 626836	781 bp proximal
St7	suppression of tumorigenicity 7	within coordinates
Tssr55085	transcription start site region 55085	316 bp downstream
Tssr55086	transcription start site region 55086	within coordinates
Tssr55087	transcription start site region 55087	31 bp upstream
Tssr55088	transcription start site region 55088	71 bp upstream
Tssr55089	transcription start site region 55089	117 bp upstream
Tssr55090	transcription start site region 55090	236 bp upstream
Tssr59909	transcription start site region 59909	761 bp downstream