rs262510874 SNP Detail

Summary

• ID
  rs262510874
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44467097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCATGTTCA TGTACATGGC
  TGGCATTCCA TGTGAAAGTC AGTCAGTGTG TCATATTTGT AGCAGCTGAG AGACTGAATG
  GTTGGAGATA GAGCTCAAGA ATGCTCGTCT GTTTTTAACA CCAGAACCTT AGTCTCTGTC
  CAAGCACCAC ATGGATTGGG CTTGACTTGC CTGTATTCTC AGGATTTGGG AGATGGGAGA
  R
  AAGAAATCAT GAGTTCAGGG TCATACTGAC TGGCCTCAAT GTGTTTTAAA AAGAAAAAGT
  CCAGAGGCCA GGCTTGATAT CTCACCTACT TAGGAGGCTA AGACAGGAGT ATTGAAAGTC
  AAGGTCAGGG CTGGAGCTGC TTTGAGATGG CTCTGGTGGT GATCTCTAAA CTCAACCCTC
  CTGAGTTCCA TCCTCAGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371164328	MGP_WTSI_7_52073043	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262510874					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371164328	MGP_WTSI_7_52073043	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44467097 () rs orientation: forward

Symbol	Name	Function Class
Atf5	activating transcription factor 5	1015 bp upstream
Cpgi18994	CpG island 18994	619 bp distal
Il4i1b	interleukin 4 induced 1B	within coordinates
Nup62	nucleoporin 62	within coordinates
Rr400297	regulatory region 400297	1600 bp downstream
Rr646219	regulatory region 646219	1267 bp distal
Rr646220	regulatory region 646220	1110 bp distal
Rr646221	regulatory region 646221	525 bp distal
Rr646222	regulatory region 646222	570 bp proximal
Rr646223	regulatory region 646223	592 bp proximal
Rr646224	regulatory region 646224	1816 bp proximal
Tssr66426	transcription start site region 66426	1733 bp downstream
Tssr66427	transcription start site region 66427	1365 bp downstream
Tssr66428	transcription start site region 66428	1339 bp downstream
Tssr66429	transcription start site region 66429	1298 bp downstream
Tssr66430	transcription start site region 66430	1267 bp downstream
Tssr72231	transcription start site region 72231	1991 bp upstream
Tssr72232	transcription start site region 72232	1747 bp upstream
Tssr72233	transcription start site region 72233	1065 bp upstream
Tssr72234	transcription start site region 72234	707 bp upstream