rs262514949 SNP Detail

Summary

• ID
  rs262514949
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:26493410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAAAACCC CCTTCACAGC
  ATTACTACTC TGCATCAATC AGTCATGGGA CACAAGGCAT CAGCCTGTAA CACTTAACAA
  ATGTCCACTA GATCATCCCC TATTCTCCCA GCAGAGAGCA TCTGCTTCAC AAAATGAGCA
  CCCAGATTTA ACACTGAAAA TGTAACCAAT GAATGATCTA ATCCAAGTTT GATCTTTACT
  R
  TGATAATAAA ATATTGTAAT TCTTTCCTTT AGGAAAGGGA GATTTTTGAA TATTTTAAGC
  ACAGAGATCT CACACACCTC CTGTGCATGC ACAAGGCGGG GGGTGGGGGG GTACATTTAG
  AATGGTGGCT CATTTCCCAA GCAGATTCTC ATCATGTTCT ACTTTAATCA GGGAAAGAGA
  CATGCAGCTT CCCTCAGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385360809	MGP_WTSI_12_27128276	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262514949					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385360809	MGP_WTSI_12_27128276	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26493410 () rs orientation: forward

Symbol	Name	Function Class
Rr464136	regulatory region 464136	711 bp proximal
Rsad2	radical S-adenosyl methionine domain containing 2	mRNA-UTR
Tssr112998	transcription start site region 112998	330 bp upstream
Tssr112999	transcription start site region 112999	377 bp upstream
Tssr113000	transcription start site region 113000	501 bp upstream
Tssr113001	transcription start site region 113001	975 bp upstream
Tssr113002	transcription start site region 113002	999 bp upstream
Tssr113003	transcription start site region 113003	1074 bp upstream
Tssr113004	transcription start site region 113004	1134 bp upstream
Tssr113005	transcription start site region 113005	1160 bp upstream
Tssr113006	transcription start site region 113006	1523 bp upstream
Tssr113007	transcription start site region 113007	1607 bp upstream
Tssr113008	transcription start site region 113008	1775 bp upstream
Tssr113009	transcription start site region 113009	1793 bp upstream
Tssr113010	transcription start site region 113010	1943 bp upstream
Tssr115902	transcription start site region 115902	541 bp upstream
Tssr115903	transcription start site region 115903	211 bp upstream
Tssr115904	transcription start site region 115904	187 bp upstream
Tssr115905	transcription start site region 115905	100 bp downstream
Tssr115906	transcription start site region 115906	228 bp downstream
Tssr115907	transcription start site region 115907	283 bp downstream
Tssr115908	transcription start site region 115908	323 bp downstream
Tssr115909	transcription start site region 115909	409 bp downstream
Tssr115910	transcription start site region 115910	461 bp downstream
Tssr115911	transcription start site region 115911	511 bp downstream
Tssr115912	transcription start site region 115912	525 bp downstream
Tssr115913	transcription start site region 115913	560 bp downstream
Tssr115914	transcription start site region 115914	612 bp downstream
Tssr115915	transcription start site region 115915	641 bp downstream
Tssr115916	transcription start site region 115916	698 bp downstream
Tssr115917	transcription start site region 115917	744 bp downstream
Tssr115918	transcription start site region 115918	763 bp downstream
Tssr115919	transcription start site region 115919	790 bp downstream
Tssr115920	transcription start site region 115920	817 bp downstream
Tssr115921	transcription start site region 115921	1122 bp downstream
Tssr115922	transcription start site region 115922	1218 bp downstream
Tssr115923	transcription start site region 115923	1301 bp downstream
Tssr115924	transcription start site region 115924	1372 bp downstream
Tssr115925	transcription start site region 115925	1387 bp downstream
Tssr115926	transcription start site region 115926	1736 bp downstream
Tssr115927	transcription start site region 115927	1780 bp downstream