rs262516501 SNP Detail

Summary

• ID
  rs262516501
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:19278734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACACCAAG GAACCACTAA
  AAATATAGAA CAATCCCTAA AGCAACAAGC AATATAGATT GTAGGGTCCA CAAGATATTC
  AAGTTTCCAA ATGTGTTAGA CACAATGAGC AAAATATCAG AAACCATTGT GGTAAATAGT
  GGTGTTATTC TTGTTCCACA ATGATACTTT TATAAGGTTG CATCAATAGA GAAATATAAC
  K
  CAAAGTCAAA AATCTAGTGG TGTTTTTTTA ATGCTCCCCT AAATATACAA GAATAGGAAA
  ACTGTCTTTA AAATCTCAGT AATGGTTCTC CTAAAAGAAA AAAAAAAAAA ACTATGTAGA
  AAATTTGGGG ACTGATGTGC GTGGTTTCTC ATTGTCAATT ATTAAAACAC TTTAGTTAGT
  GGCTGCATTG ATTCGCCATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss348817487	MGP_WTSI_1_19198591	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262516501					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss348817487	MGP_WTSI_1_19198591	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:19278734 () rs orientation: forward

Symbol	Name	Function Class
Cpgi65	CpG island 65	1171 bp proximal
Rr408235	regulatory region 408235	1986 bp distal
Rr408237	regulatory region 408237	620 bp distal
Rr408238	regulatory region 408238	243 bp proximal
Rr408239	regulatory region 408239	461 bp proximal
Tfap2b	transcription factor AP-2 beta	404 bp upstream
Tssr6030	transcription start site region 6030	430 bp upstream
Tssr6031	transcription start site region 6031	473 bp upstream
Tssr6032	transcription start site region 6032	488 bp upstream
Tssr6033	transcription start site region 6033	504 bp upstream
Tssr6034	transcription start site region 6034	528 bp upstream
Tssr6035	transcription start site region 6035	560 bp upstream
Tssr6036	transcription start site region 6036	584 bp upstream
Tssr6037	transcription start site region 6037	602 bp upstream
Tssr6038	transcription start site region 6038	630 bp upstream
Tssr6039	transcription start site region 6039	645 bp upstream