rs262517465 SNP Detail

Summary

• ID
  rs262517465
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113616888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cccaggAAA GCACTATACA CTAAGTGTGG
  AATAGCCCCG CTACCTTATT CCTGTAGGTC AAACGCACAT AGGAACAGTG GGTAAAGGCA
  GTGTAACTGT TGCCACTTAA TCTCCttttg ttttttcaag acagggtttc tttgtgtagc
  T
  ctagctgtcc tactccctct gtagaccagg ctggcctcaa actcagagat ccacctgcct
  cggcttccca agagctggga ttaaaggtgt gcgccaccac tgcctggcAA TGATTTATGT
  GTGTGTGTTT ATGAAtttta cttgattata                                 
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911260	CHEV_6_113589921	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262517465					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113616888 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17852	CpG island 17852	1157 bp distal
Gm43964	predicted gene, 43964	635 bp downstream
Irak2	interleukin-1 receptor-associated kinase 2	Intron
Rr399834	regulatory region 399834	1350 bp downstream
Rr636556	regulatory region 636556	1389 bp distal
Rr636557	regulatory region 636557	1537 bp distal
Rr636558	regulatory region 636558	1471 bp distal
Rr636559	regulatory region 636559	394 bp distal
Tssr58237	transcription start site region 58237	1383 bp downstream
Tssr62463	transcription start site region 62463	550 bp upstream