rs262518019 SNP Detail

Summary

• ID
  rs262518019
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:140843717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGAAAGG CTCCAGGCCC
  CAGAGGACAG CACCCCAGCC AGACACCTTA CTGACCTCGG AAGAAAGTGC TGAAGTCGAA
  GATGGGGGTG TGGCGGTTGC GCTCCAGCAG CTGGGGTGGG GTGGAGGGGC CGGTAGTGCC
  CATAGGGCTG CCTACCTCCC AGTACACCTT GCACTTGCCC ATACGCAGGG CCCACAGTGA
  Y
  GGTCCTCGAA GCTCCAGCTG AAGGCCGGGA GACACATGCT GGAGAAGCGT CTCTGTGTAG
  TGCAGCTGCT TCTGATCTGG GAGCTCAGCA GGACTGGGAA AGATCACCGG CTGGGGCTCT
  GAAGTTCTTA CTGCTGGGGC CATGGGGCTG TACAGGAACA CGCATCTGGG GTGCCCCACC
  ACTGCCTGTA GCACTGTGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss373428502	MGP_WTSI_7_148449703	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs262518019					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373428502	MGP_WTSI_7_148449703	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140843717 () rs orientation: forward

Symbol	Name	Function Class
Irf7	interferon regulatory factor 7	within coordinates
Phrf1	PHD and ring finger domains 1	1054 bp downstream
Rr154683	regulatory region 154683	1284 bp proximal
Rr166948	regulatory region 166948	1083 bp proximal
Tssr69941	transcription start site region 69941	606 bp downstream
Tssr69942	transcription start site region 69942	1608 bp upstream
Tssr75604	transcription start site region 75604	234 bp upstream
Tssr75605	transcription start site region 75605	40 bp upstream
Tssr75606	transcription start site region 75606	17 bp downstream
Tssr75607	transcription start site region 75607	93 bp downstream
Tssr75608	transcription start site region 75608	150 bp downstream
Tssr75609	transcription start site region 75609	168 bp downstream
Tssr75610	transcription start site region 75610	193 bp downstream
Tssr75611	transcription start site region 75611	449 bp downstream
Tssr75612	transcription start site region 75612	711 bp downstream
Tssr75613	transcription start site region 75613	1439 bp downstream
Tssr75614	transcription start site region 75614	1649 bp downstream
Tssr75615	transcription start site region 75615	1915 bp downstream