rs262525996 SNP Detail

Summary

• ID
  rs262525996
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156136180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCATCTT TCAGAGCCTT
  GCAAGGATCA CAATAACTTG ACAGGGGCTA CATGGTGCTT CCAAAAACCA GGACCATATC
  CTGGAGTCCA TGACCGTGCC TTTCTAAAAA TAGAAATCTG TACAGATGTC ACTGAGTTAG
  AATTTTGGGT GCAGTCATCT TGTGTCAACC AGCCGTACTC TAAACCCAGT GACTGGTGAC
  S
  TCTTTAGAGG GAAGCAGAGA TAAGGGTATG TGACTGTAAG CCACAGGACC TGTGAACTAA
  GACGAGGAAG ACACTTGAAG ACTCCCTCTA GGGCCTTCTT GAGGTTCTAG GGGCATATCT
  TGGAAATTCT GGAAGACAAC TGTTGTCTTT GGCTACCCTG TAAATCTCCT CACCTTCAGG
  TTCTTTTGTG GTTCTGCTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321444932	CHEV_4_155425832	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262525996					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156136180 () rs orientation: forward

Symbol	Name	Function Class
Gm13648	predicted gene 13648	992 bp downstream
Rr93557	regulatory region 93557	779 bp distal
Rr97568	regulatory region 97568	34 bp proximal
Rr106662	regulatory region 106662	1460 bp distal
Tssr45000	transcription start site region 45000	1250 bp upstream
Tssr45001	transcription start site region 45001	1217 bp upstream
Tssr45002	transcription start site region 45002	962 bp upstream
Tssr45003	transcription start site region 45003	951 bp upstream
Tssr45004	transcription start site region 45004	927 bp upstream
Ttll10	tubulin tyrosine ligase-like family, member 10	906 bp upstream