rs262530945 SNP Detail

Summary

• ID
  rs262530945
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:166080821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAT TGTGGTCATC AGCCCCACCC
  Y
  TGGGACTAAC TTGTTCTTTC CTGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320087511	CHEV_1_168183383	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262530945					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:166080821 () rs orientation: forward

Symbol	Name	Function Class
Cpgi965	CpG island 965	546 bp proximal
Gm70596	predicted gene, 70596	1545 bp downstream
Ildr2	immunoglobulin-like domain containing receptor 2	887 bp upstream
Rr422555	regulatory region 422555	451 bp proximal
Rr422556	regulatory region 422556	860 bp proximal
Rr422557	regulatory region 422557	952 bp proximal
Tssr9868	transcription start site region 9868	798 bp upstream
Tssr9869	transcription start site region 9869	843 bp upstream
Tssr9870	transcription start site region 9870	907 bp upstream
Tssr9871	transcription start site region 9871	934 bp upstream