rs262545725 SNP Detail

Summary

• ID
  rs262545725
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89958782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAATATGG GAGGTGGAGA
  CAAAAAATAA TCTCTCCATT TAGTAGTCAG TGAGTCAAAG GCAAAAACAA ATTTAACAAA
  ATCGCCTTTA ACTGTTTTTT CTTTCCACAA CAACCTACAC CAGAGGTTGC TAAATTTTAA
  GAATCGTGGA AAACAGTCTC TTGTTTGTGA CATCACTTTG CAAAACAATT TAGGGGCTGT
  M
  CACCAGGTGA AGGGTCTCAA GAAATTTGGA ATTCCATTCC CATTATGAGA AAAATGAACA
  AATGCCCAGT CTAGTGACAT CCCTTAGGCG CAACACAATC CACGGGGGCC TCCATGTCCA
  GCTTCCCAAA TAAGATAACT GCTTGGGTAG CCAAAACTAC AGTATAGACA ACAGGAAGTC
  AAAGACTGCA GCGAAAATAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358825055	MGP_WTSI_3_89855397	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262545725					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358825055	MGP_WTSI_3_89855397	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89958782 () rs orientation: forward

Symbol	Name	Function Class
4933434E20Rik	RIKEN cDNA 4933434E20 gene	159 bp upstream
Cpgi13449	CpG island 13449	312 bp proximal
Gm53012	predicted gene, 53012	1429 bp upstream
Rr375341	regulatory region 375341	within coordinates
Rr580266	regulatory region 580266	67 bp distal
Rr580267	regulatory region 580267	within coordinates
Rr580268	regulatory region 580268	172 bp proximal
Rr580269	regulatory region 580269	402 bp proximal
Rr580270	regulatory region 580270	967 bp proximal
Tssr30147	transcription start site region 30147	62 bp upstream
Tssr30148	transcription start site region 30148	155 bp upstream
Tssr30149	transcription start site region 30149	1349 bp upstream
Tssr30150	transcription start site region 30150	1446 bp upstream
Tssr34189	transcription start site region 34189	957 bp downstream
Tssr34190	transcription start site region 34190	988 bp downstream
Tssr34191	transcription start site region 34191	1133 bp downstream
Ubap2l	ubiquitin-associated protein 2-like	Intron