rs262547499 SNP Detail

Summary

• ID
  rs262547499
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67143693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGATAAACA GCAGCTCGAT
  GAGAAACTCA AAAAGTAAGC GTTATAGGAT TCAGCCCTGA CTTCTCACTG TGTGGGTGCA
  GGGGAAACAC GGGTTTGAGT GTTTCCAAAT GATTGCTTCA TCATATTTGG GGTGAAATAA
  ACAAGGGCCA GCTTTAAAAA TATTTAATTA AAATGGCACT GGGTAGATTT GTAAAACATG
  Y
  GTTTCTCTCT ATTTTAAGGC AATCAGTATA AAAAGTTCAA TTATGCATAG GTAGGAAGGC
  TGGGGGAAGA ATTAACCATG AGCTAATGTG CTGCTGTTAA ACTAGGAAAG AGTTTGAAAT
  GAGCAATCTG CAGAGCAAGA TTGAGGACGA GCAGGCCCTC GGCATGCAGC TGCAGAAGAA
  GATCAAGGAG TTGCAGGTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383730834	MGP_WTSI_11_67066369	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262547499					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383730834	MGP_WTSI_11_67066369	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67143693 () rs orientation: forward

Symbol	Name	Function Class
Myh4	myosin, heavy polypeptide 4, skeletal muscle	within coordinates
Rr449442	regulatory region 449442	931 bp proximal
Tssr3527	transcription start site region 3527	1990 bp upstream
Tssr3528	transcription start site region 3528	1866 bp upstream
Tssr3529	transcription start site region 3529	1922 bp upstream
Tssr102196	transcription start site region 102196	1991 bp downstream
Tssr102197	transcription start site region 102197	1947 bp downstream
Tssr102198	transcription start site region 102198	1886 bp downstream
Tssr102199	transcription start site region 102199	1132 bp downstream
Tssr102200	transcription start site region 102200	981 bp downstream
Tssr102201	transcription start site region 102201	608 bp upstream
Tssr102202	transcription start site region 102202	1130 bp upstream
Tssr102203	transcription start site region 102203	1190 bp upstream
Tssr102204	transcription start site region 102204	1588 bp upstream
Tssr102205	transcription start site region 102205	1806 bp upstream
Tssr102206	transcription start site region 102206	1910 bp upstream
Tssr108529	transcription start site region 108529	1909 bp upstream
Tssr108530	transcription start site region 108530	1907 bp upstream
Tssr108531	transcription start site region 108531	1879 bp upstream
Tssr108532	transcription start site region 108532	1109 bp upstream
Tssr108533	transcription start site region 108533	957 bp upstream
Tssr108534	transcription start site region 108534	263 bp upstream
Tssr108535	transcription start site region 108535	157 bp upstream
Tssr108536	transcription start site region 108536	1177 bp downstream
Tssr108537	transcription start site region 108537	1189 bp downstream
Tssr108538	transcription start site region 108538	1691 bp downstream
Tssr108539	transcription start site region 108539	1899 bp downstream
Tssr108540	transcription start site region 108540	1959 bp downstream