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rs262550991 SNP Detail
Summary
  • ID
    rs262550991
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr17:48045145 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGAGGGTTGC TGTGGAGGAA
GGAACCTCCC CCCCCCCTAG AACCATTGCT CAGCAGTCCT GGTTAAGGAG GCTCAACTGT
CCAATGAGCC CTTTGATTTC GTTACTCAAG GGCTGAAGTT CAGCCCACAA GTAAACAAAT
GTGTGAATGT CTTTCTGTTG AACAGGAGGA AGGCTCCTGC ATGGTGGGTC TGGAGAGCCT
Y
TCCCTGAACG CTGAGAGTGG CCAGCCCCTC TGGATCCTCG GGGATGTCTT CCTCAGGTCT
TACTATGCTG TCTTCGACAT GGGCAATAAC AGGGTGGGCC TTGCCCCTTC TGTCTAGACT
TGACATCTAG ACAAACCCCC CCCCCACCCC CGTGCCCTTC CTTCTTCCCC TCAGCCTGTC
CCATCTGCCC CGCCTCTCTG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss398353048 MGP_WTSI_17_47871169 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs262550991 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss398353048 MGP_WTSI_17_47871169 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:48045145 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Pgc progastricsin (pepsinogen C) within coordinates
Tssr145027 transcription start site region 145027 1808 bp downstream
Tssr145028 transcription start site region 145028 1767 bp downstream
Tssr145029 transcription start site region 145029 1750 bp downstream
Tssr145030 transcription start site region 145030 1255 bp downstream
Tssr145031 transcription start site region 145031 1247 bp downstream
Tssr145032 transcription start site region 145032 1162 bp downstream
Tssr145033 transcription start site region 145033 1160 bp downstream
Tssr145034 transcription start site region 145034 1149 bp downstream
Tssr145035 transcription start site region 145035 465 bp downstream
Tssr145036 transcription start site region 145036 436 bp downstream
Tssr145037 transcription start site region 145037 409 bp downstream
Tssr145038 transcription start site region 145038 390 bp downstream
Tssr145039 transcription start site region 145039 19 bp downstream
Tssr145040 transcription start site region 145040 within coordinates
Tssr145041 transcription start site region 145041 19 bp upstream
Tssr145042 transcription start site region 145042 37 bp upstream
Tssr145043 transcription start site region 145043 92 bp upstream
Tssr145044 transcription start site region 145044 109 bp upstream
Tssr145045 transcription start site region 145045 119 bp upstream
Tssr145046 transcription start site region 145046 138 bp upstream
Tssr145047 transcription start site region 145047 186 bp upstream
Tssr145048 transcription start site region 145048 218 bp upstream
Tssr148470 transcription start site region 148470 1782 bp upstream
Tssr148471 transcription start site region 148471 1760 bp upstream
Tssr148472 transcription start site region 148472 1746 bp upstream
Tssr148473 transcription start site region 148473 1732 bp upstream
Tssr148474 transcription start site region 148474 1714 bp upstream
Tssr148475 transcription start site region 148475 1170 bp upstream
Tssr148476 transcription start site region 148476 1143 bp upstream
Tssr148477 transcription start site region 148477 1110 bp upstream
Tssr148478 transcription start site region 148478 410 bp upstream
Tssr148479 transcription start site region 148479 358 bp upstream
Tssr148480 transcription start site region 148480 94 bp downstream
Tssr148481 transcription start site region 148481 124 bp downstream
Tssr148482 transcription start site region 148482 255 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory