rs262555048 SNP Detail

Summary

• ID
  rs262555048
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:143011092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATGTGGG GGTTACAGGT
  GGGCCCTAGG TCCAAGTGTT TGTGAGAATC ATGGCAAAGA ACAGAGGCCT GGCCGACCTT
  CACACAGAGG CCTCTCTGCT GTGTGTGTGC CACATGGCTC ACTGTAGTCC TTGAGACTCC
  ACGACTACCT GCCAGGTTTC TGGCCCAGCA TGCTCCTAAT AGTTGGGACC TAACCCATAC
  Y
  TCTGCTGTCC AGCACCTCAA GTACCATGCC CACCCTCAAG ACATCAAAGA AAGGGCTGCC
  CTAGCACACA CCTCCATGGG CACATACAGT AAGTAGCTTT CTTTGCTGGG TTCTAATTCC
  TGGGCAAGCT GAGGGCTGCT GCAGGCAGCA GGGCCTGCCT TCCTTGAAGT ATACCCTCTC
  AATGGGATGG GGGCATTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373469238	MGP_WTSI_7_150643260	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262555048					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373469238	MGP_WTSI_7_150643260	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:143011092 () rs orientation: forward

Symbol	Name	Function Class
Cdkn1c	cyclin dependent kinase inhibitor 1C	984 bp downstream
Cpgi19981	CpG island 19981	1494 bp proximal
Tssr70288	transcription start site region 70288	1344 bp upstream
Tssr75936	transcription start site region 75936	1135 bp downstream
Tssr75937	transcription start site region 75937	1224 bp downstream
Tssr75938	transcription start site region 75938	1417 bp downstream
Tssr75939	transcription start site region 75939	1449 bp downstream
Tssr75940	transcription start site region 75940	1468 bp downstream
Tssr75941	transcription start site region 75941	1581 bp downstream
Tssr75942	transcription start site region 75942	1979 bp downstream