rs262561568 SNP Detail

Summary

• ID
  rs262561568
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8060010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTAGATGC TAATGCCAAC
  ATACAGAATG TAACAACTTC AGGGAACAAA GCAGAGATTG TGGCTTCTGT CACTGCTAAA
  GGAGAGTCCC AATTTGAAGC TCTCAATTTT GATTTTCAAG CACAAGCTCA ATTCCTGGAG
  TTAAATCCTC ATCCTCCAGT CCTGAAGGAA TCCATGAACT TCTCCAGTAA GCATGTGAGA
  M
  TGGAGCATGA GGGTGAGATA GTATTTGATG GAAAGGCCAT TGAGGGGAAA TCAGACACAG
  TCGCAAGTTT ACACACAGAG AAAAATGAAG TAGAGTTTAA TAATGGTATG ACTGTCAAAG
  TAAACAATCA GCTCACCCTT GACAGTCACA CAAAGTACTT CCACAAGTTG AGTGTTCCTA
  GGCTGGACTT CTCCAGTAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385064700	MGP_WTSI_12_8016816	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262561568					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385064700	MGP_WTSI_12_8016816	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8060010 () rs orientation: forward

Symbol	Name	Function Class
Apob	apolipoprotein B	within coordinates
Tssr3782	transcription start site region 3782	1298 bp downstream
Tssr112643	transcription start site region 112643	1934 bp downstream
Tssr112644	transcription start site region 112644	1720 bp downstream
Tssr112645	transcription start site region 112645	1618 bp downstream
Tssr112646	transcription start site region 112646	1589 bp downstream
Tssr112647	transcription start site region 112647	1417 bp downstream
Tssr112648	transcription start site region 112648	1395 bp downstream
Tssr112649	transcription start site region 112649	913 bp downstream
Tssr112650	transcription start site region 112650	833 bp downstream
Tssr112651	transcription start site region 112651	781 bp downstream
Tssr112652	transcription start site region 112652	751 bp downstream
Tssr112653	transcription start site region 112653	732 bp downstream
Tssr112654	transcription start site region 112654	718 bp downstream
Tssr112655	transcription start site region 112655	695 bp downstream
Tssr112656	transcription start site region 112656	675 bp downstream
Tssr112657	transcription start site region 112657	661 bp downstream
Tssr112658	transcription start site region 112658	628 bp downstream
Tssr112659	transcription start site region 112659	549 bp downstream
Tssr112660	transcription start site region 112660	425 bp downstream
Tssr112661	transcription start site region 112661	190 bp downstream
Tssr112662	transcription start site region 112662	41 bp upstream
Tssr112663	transcription start site region 112663	276 bp upstream
Tssr112664	transcription start site region 112664	301 bp upstream
Tssr112665	transcription start site region 112665	466 bp upstream
Tssr112666	transcription start site region 112666	475 bp upstream
Tssr112667	transcription start site region 112667	522 bp upstream
Tssr112668	transcription start site region 112668	660 bp upstream
Tssr112669	transcription start site region 112669	745 bp upstream
Tssr112670	transcription start site region 112670	798 bp upstream
Tssr112671	transcription start site region 112671	913 bp upstream
Tssr112672	transcription start site region 112672	1492 bp upstream
Tssr112673	transcription start site region 112673	1535 bp upstream
Tssr112674	transcription start site region 112674	1636 bp upstream
Tssr112675	transcription start site region 112675	1663 bp upstream
Tssr112676	transcription start site region 112676	1766 bp upstream
Tssr112677	transcription start site region 112677	1916 bp upstream