rs262570854 SNP Detail

Summary

• ID
  rs262570854
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:15225958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTAGTCCC ACACCTAAAA
  TTCTATGAGT TGAGAGTCTG AGGTGAGAAG TTTCAAGTAC AATCTGAGAA ATGGAAACTT
  TGTCTCAAGA TCAAATTCTT GGCTGGGTAG CTGGCACAGT AAATATAAGT TCAAAACCCT
  AGCAGCCAGG CACGTATGAT GGCTAAATCT GGAAGCTCTG ATTTTAGTGA GAAGCCTTCA
  R
  TGAATAGTAT TTGGAGTGCT CAGGGAAGGT AATCTATTAT CAGTGTGTGT GTATGTACAT
  GTACCCAAAA GAACATTAAT CCTTTTTGAG CAATTTTCCC ATTGGGGGAA TTTTAGCTGA
  GATGGAACTC TCATGCATAA ACTCAATAGC TGAAAGTCTA CCCAGTAAAG GGCTTAGGAT
  TTTGCACTGC ATGGTATCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376729992	MGP_WTSI_9_15119106	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262570854					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376729992	MGP_WTSI_9_15119106	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:15225958 () rs orientation: forward

Symbol	Name	Function Class
Gm22620	predicted gene, 22620	527 bp upstream
Gm23455	predicted gene, 23455	1827 bp upstream
Gm24299	predicted gene, 24299	518 bp downstream
Gm24357	predicted gene, 24357	860 bp upstream
Gm24455	predicted gene, 24455	730 bp downstream
Gm25791	predicted gene, 25791	183 bp upstream
Gm56153	predicted gene, 56153	1988 bp downstream
Gm56154	predicted gene, 56154	180 bp upstream
Mir7650	microRNA 7650	1993 bp downstream
Rr208215	regulatory region 208215	1244 bp proximal
Rr211702	regulatory region 211702	1854 bp distal
Taf1d	TATA-box binding protein associated factor, RNA polymerase I, D	within coordinates
Tssr83864	transcription start site region 83864	838 bp downstream
Tssr83865	transcription start site region 83865	858 bp upstream