rs262599014 SNP Detail

Summary

• ID
  rs262599014
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:35906125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TATCCACTT ATTTAATGAT AGATTTAATA
  CTATGGAGAA CATTGGCTTT GATTAAAATT TAGCCCCTAG CCCCCCAAAT ATTAACTTCT
  TAGTATCACT TATGATTACT TTTCTTCCCT CTTAGAAATA GGAAGTTACC CACTGGTGAG
  Y
  TTTGTTTGCT GTTTTATTTG GCTCCTCAGA TGAGCGATAT TAACTTGTAT TAGTAAGTGG
  CTGGACCTGG GATAACCCAT AAGGACCGAT AGGGTAGGAA TACAAAAGAA TGGAGGTTGG
  AGCACAGTTC AGCAATCAAT TGGACCTCAT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325583892	CHEV_18_35932726	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262599014					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35906125 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9842	CpG island 9842	579 bp distal
Rr393530	regulatory region 393530	827 bp downstream
Rr535947	regulatory region 535947	1504 bp distal
Rr535948	regulatory region 535948	286 bp distal
Tssr150551	transcription start site region 150551	1704 bp downstream
Tssr150552	transcription start site region 150552	1585 bp downstream
Tssr150553	transcription start site region 150553	1514 bp downstream
Tssr150554	transcription start site region 150554	1473 bp downstream
Tssr150555	transcription start site region 150555	1457 bp downstream
Tssr150556	transcription start site region 150556	1401 bp downstream
Tssr150557	transcription start site region 150557	1362 bp downstream
Tssr150558	transcription start site region 150558	1331 bp downstream
Tssr150559	transcription start site region 150559	1118 bp downstream
Tssr150560	transcription start site region 150560	941 bp downstream
Tssr150561	transcription start site region 150561	907 bp downstream
Tssr150562	transcription start site region 150562	729 bp upstream
Ube2d2a	ubiquitin-conjugating enzyme E2D 2A	Intron