rs262600206 SNP Detail

Summary

• ID
  rs262600206
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:101295358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGACCTAGCC CCGAGCCCCC
  TTGGCACGCA CACTGCCGCC GCCGCCGCTA GCCACTCGCT TCAGAGTCCC CAGCCGCACG
  GGCGGCCACG CGACCCCAGG GCGCCTGGGA AAAGCCTGCA CCGCCGCGCC GCGCCGCGCC
  GCCGCACCGC ACCGGGCAGC GCCGAGCTGC CCCGACCCGC GCTCTTGCCG GCCCGCAGCT
  Y
  CGGCGCCCGG ACTCCGGGGC GGTGGCGATC ACAGCCACCA CGCTTGGTTC TCGGCGCGGG
  GACCGGGCTC TTAAGCCCCC ACTGCCTCCC GTAGAGCCCT GGCGCACAAG CACACAGCAG
  CAGGCTGGCC TCGGCTAGGA ATCCCAGGAA GGACAGACCC CTTTCCCCCC TTTTTTCCCT
  CTCCCCCCAA TTTTCACGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404192027	MGP_WTSI_X_99447091	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262600206					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404192027	MGP_WTSI_X_99447091	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:101295358 () rs orientation: forward

Symbol	Name	Function Class
Cited1	Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1	within coordinates
Cpgi22880	CpG island 22880	within coordinates
Gm14858	predicted gene 14858	899 bp upstream
Rr8160	regulatory region 8160	within coordinates
Rr8161	regulatory region 8161	1842 bp proximal
Tssr163910	transcription start site region 163910	955 bp upstream
Tssr163911	transcription start site region 163911	793 bp upstream
Tssr163912	transcription start site region 163912	106 bp downstream
Tssr163913	transcription start site region 163913	312 bp downstream
Tssr163914	transcription start site region 163914	402 bp downstream
Tssr163915	transcription start site region 163915	436 bp downstream