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rs262606552 SNP Detail
Summary
  • ID
    rs262606552
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr15:12825672 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTTCCCACTT GCATTAAATT
    CATTGATTTG AACTTCGCAT CCATAGTACA GTGGTACAGT ATCTAGCTTT TATTTTTGGA
    GGGGAGTGTG TGTTGAAACA GGGTTTCTCT GTGTAGCCCT GGCTGTCCTA GAACTCACCG
    TGTAGACCAG GCTGGCCTCG AACTCAGAAA TCCGCCTGCC TCTGCCTCCC AAGTTCTGGG
    W
    TTAAAGGCGT GCGCCACCAC TGCCAGGGCC TTTGTCTAGC TTCTCTAACG GAGTGTGCCG
    TTTTCTCACT GTGGAGAGGT GTTAATTCCC TGACTGTTGT CCACCTCTAG CTTCAGTAGA
    GTCCTTTTTA TTCTCCAGGA CTCTCTACAT CCTTACTTTA TTGTATTTAT CACATCGCGT
    TTTTCTTTTT ATAGTGTTCG                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss393066385 MGP_WTSI_15_12755341 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs262606552 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss393066385 MGP_WTSI_15_12755341 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:12825672 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
6030458C11Rik RIKEN cDNA 6030458C11 gene 937 bp upstream
Cpgi6961 CpG island 6961 230 bp distal
D15Mit199 DNA segment, Chr 15, Massachusetts Institute of Technology 199 1030 bp proximal
Drosha drosha, ribonuclease type III within coordinates
Rr311575 regulatory region 311575 within coordinates
Rr369910 regulatory region 369910 681 bp downstream
Rr369911 regulatory region 369911 445 bp downstream
Tssr130744 transcription start site region 130744 753 bp downstream
Tssr130745 transcription start site region 130745 703 bp downstream
Tssr130746 transcription start site region 130746 679 bp downstream
Tssr133796 transcription start site region 133796 1774 bp upstream
Tssr133797 transcription start site region 133797 982 bp upstream
Tssr133798 transcription start site region 133798 932 bp upstream
Tssr133799 transcription start site region 133799 911 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory