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rs262608357 SNP Detail
Summary
  • ID
    rs262608357
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr14:103287193 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATGCCAGCTC AGTCTATTGC
TGTATTAATT AACTGGTGTT CTTCTGTTGC AGATCTACAG TTCCAACACC TCCAGCACTG
TTTGGGGTCG ACCAGACTTC AGGCTCCCAC CGACATATGC TGCTTTTGTT AATGGTGTTG
CTGTAAGAAA GTTTGTTGGT CTTCTCTTTA ATTAAATCAT TATAACTCCA GAGGCAGGAA
Y
GAGATCACTA AGGTTCAGAA ATCTGAGGTG GCCTGCCCTT CCTCCTCATT TTCCTGAATC
TACAATAAAC TGGTACTTTC CCCATCAATT ATAAAGGAGA AGAAATGGAG GCTCTAGATT
AAAATTACTC ATAAAGTATT GTAATTCTGG ACCTTGAATA GACATAAGTA TGATGTGTAT
ATAACTTCAT ATGCAAACAT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss392295947 MGP_WTSI_14_103448974 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs262608357 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss392295947 MGP_WTSI_14_103448974 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr14:103287193 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Acod1 aconitate decarboxylase 1 within coordinates
Gm41235 predicted gene, 41235 1017 bp upstream
Rr404266 regulatory region 404266 1704 bp upstream
Rr496962 regulatory region 496962 610 bp distal
Rr496963 regulatory region 496963 1749 bp proximal
Rr496964 regulatory region 496964 1801 bp proximal
Rr496965 regulatory region 496965 1848 bp proximal
Tssr4512 transcription start site region 4512 662 bp downstream
Tssr126972 transcription start site region 126972 852 bp downstream
Tssr126973 transcription start site region 126973 725 bp downstream
Tssr126974 transcription start site region 126974 495 bp downstream
Tssr126975 transcription start site region 126975 481 bp downstream
Tssr126976 transcription start site region 126976 458 bp downstream
Tssr126977 transcription start site region 126977 433 bp downstream
Tssr126978 transcription start site region 126978 391 bp downstream
Tssr126979 transcription start site region 126979 372 bp downstream
Tssr126980 transcription start site region 126980 360 bp downstream
Tssr126981 transcription start site region 126981 149 bp downstream
Tssr126982 transcription start site region 126982 91 bp downstream
Tssr126983 transcription start site region 126983 54 bp downstream
Tssr126984 transcription start site region 126984 108 bp upstream
Tssr126985 transcription start site region 126985 544 bp upstream
Tssr126986 transcription start site region 126986 1277 bp upstream
Tssr126987 transcription start site region 126987 1316 bp upstream
Tssr126988 transcription start site region 126988 1533 bp upstream
Tssr126989 transcription start site region 126989 1556 bp upstream
Tssr126990 transcription start site region 126990 1763 bp upstream
Tssr126991 transcription start site region 126991 1835 bp upstream
Tssr130074 transcription start site region 130074 1375 bp upstream
Tssr130075 transcription start site region 130075 1336 bp upstream
Tssr130076 transcription start site region 130076 1321 bp upstream
Tssr130077 transcription start site region 130077 1050 bp upstream
Tssr130078 transcription start site region 130078 1023 bp upstream
Tssr130079 transcription start site region 130079 1002 bp upstream
Tssr130080 transcription start site region 130080 1666 bp downstream
Tssr130081 transcription start site region 130081 1721 bp downstream
Tssr130082 transcription start site region 130082 1748 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory