rs262611280 SNP Detail

Summary

• ID
  rs262611280
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137445751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCCGAGAC TGAGCAGAGC CAGGAGTTAG
  GAAGCGCTTT TAAGGTGAAG TGACAGGCTG TCGAGTTGCT AAGTGCAGAG TCCCACGCAG
  GAAGACTAGG GAGTTCAGGC ATGTTCTTAG ACCTGCACTC AGAATTCGGT TTCTCTTGCC
  R
  GGAGCTTTCC CATCAGGCCA TCTGCTAAAG GTGCTCTGTT AGCTTCACCC ATTGTGAAGG
  AGGTGTATCA CTCTTACTGG GTTTTTTTTC TTGGATTTTC CCTTTCAGCA ATACTGACTT
  CATTGTTCAG TGATGGACTC TGTTTGGGGG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321366744	CHEV_4_137274355	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262611280					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137445751 () rs orientation: forward

Symbol	Name	Function Class
Gm52682	predicted gene, 52682	1520 bp downstream
Rap1gap	Rap1 GTPase-activating protein	within coordinates
Rr86556	regulatory region 86556	1050 bp proximal
Rr100343	regulatory region 100343	849 bp proximal
Tssr39776	transcription start site region 39776	1085 bp downstream
Tssr39777	transcription start site region 39777	1059 bp downstream
Tssr39778	transcription start site region 39778	774 bp upstream
Tssr39779	transcription start site region 39779	804 bp upstream
Tssr39780	transcription start site region 39780	1080 bp upstream
Tssr39781	transcription start site region 39781	1245 bp upstream