rs262611745 SNP Detail

Summary

• ID
  rs262611745
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66208455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAACCAATC CAGCTTCTGG
  GAAAGGATCC ATTGTGTAAT ACTGGGGCTT CAGCCTGTGT CCCCTGGCTC AGGGCAGCCG
  GCCCAGTGGT GGCAGTGGCC CCTTGGCAGA GTATGCTAGT TCAGGCTTAG AGGCAACAGG
  CATGTGAAAG GAATTTGCTG GAGCCAATGG GCTTGTCCTC CTGAAAGGGC TTTCTGGGGC
  R
  GGGGGTGGGG GTGGGGATGG GGGCTCACTG CTAATCTCAG GCTTTGTCCT TCCCCTTTCT
  AGTTCTGCCT TCTCTGCAGT CCTAAATTCC TTCCCTTCCC ATTTTGCTTT TACCCCACCC
  CCTCCCCAAT CCATACTCAG CCTGGTGGCA CAAGCGTTGC CCAGAGATGG TGAGATGGAT
  TGAATTTCCC GTGCTGATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ
ss391367322	MGP_WTSI_14_66589843	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ
rs262611745					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391367322	MGP_WTSI_14_66589843	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66208455 () rs orientation: forward

Symbol	Name	Function Class
Clu	clusterin	within coordinates
Cpgi6638	CpG island 6638	1908 bp distal
Rr297400	regulatory region 297400	254 bp distal
Rr297401	regulatory region 297401	145 bp proximal
Tssr126247	transcription start site region 126247	1268 bp downstream
Tssr126248	transcription start site region 126248	1214 bp downstream
Tssr126249	transcription start site region 126249	1185 bp downstream
Tssr126250	transcription start site region 126250	472 bp downstream
Tssr126251	transcription start site region 126251	415 bp downstream
Tssr126252	transcription start site region 126252	397 bp downstream
Tssr126253	transcription start site region 126253	385 bp downstream
Tssr126254	transcription start site region 126254	351 bp downstream
Tssr126255	transcription start site region 126255	337 bp downstream
Tssr126256	transcription start site region 126256	103 bp downstream
Tssr126257	transcription start site region 126257	43 bp upstream
Tssr126258	transcription start site region 126258	107 bp upstream
Tssr126259	transcription start site region 126259	158 bp upstream
Tssr126260	transcription start site region 126260	720 bp upstream
Tssr126261	transcription start site region 126261	790 bp upstream
Tssr126262	transcription start site region 126262	811 bp upstream