rs262618933 SNP Detail

Summary

• ID
  rs262618933
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:54445613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAAGGAA GGAAGGAAGG
  AAGGAAGGAA GGAAGGAAGG AAGAGAGAGA GAGAGAAAGA ACAGTGAGGA GGTGGGACTT
  TACAGGCTGG GGGAGGGTTC TGCTGTTCCA GAGGATGGAG ATTGGTGAAG CTATGTGGTA
  AAGGTACAGG GCTGGGCCTT ATCTTTATTG GAAACTTTGT TATTTTCTTC CTCATTGTTT
  K
  TGTGTGTGTG TGTGTGTTTA TGGCTTTGTT TTGTTTATCT TTTATTTTGA TCTTCTGAAT
  AGTATATTAG CCAAGCCTGG TAGCTCACAC CTATAGTCCC AGCACTGGAG AGGCTGAGTC
  AGCAGAATTC ACTTGCGTTC AAGGCCAGCC TGGGTTATAA TGTGAAATCT TCTCTGAAAA
  ATAAATGAGT AAATAATTAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322964814	CHEV_9_54386136	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262618933					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:54445613 () rs orientation: forward

Symbol	Name	Function Class
Gm54935	predicted gene, 54935	927 bp downstream
Gm69041	predicted gene, 69041	within coordinates
Rr679145	regulatory region 679145	1353 bp distal
Rr679146	regulatory region 679146	768 bp distal
Rr679147	regulatory region 679147	298 bp distal
Sh2d7	SH2 domain containing 7	within coordinates
Tssr85160	transcription start site region 85160	655 bp upstream