rs262632943 SNP Detail

Summary

• ID
  rs262632943
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:130552980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CCCTGGGCTT GGCTTAGCTA CTCATCAGGC CTCCTGGCTG GGGCTCGAGC
  Y
  TCAGAGAGCA GAGCCAACGC TGCTCTCAGG GCAGTTGTGG CTCCCTGGGC           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318878	CHEV_4_130381584	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262632943					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130552980 () rs orientation: forward

Symbol	Name	Function Class
Gm26716	predicted gene, 26716	within coordinates
Sdc3	syndecan 3	mRNA-UTR
Tssr39291	transcription start site region 39291	1871 bp downstream
Tssr39292	transcription start site region 39292	1788 bp downstream
Tssr39293	transcription start site region 39293	197 bp upstream
Tssr39294	transcription start site region 39294	352 bp upstream
Tssr39295	transcription start site region 39295	518 bp upstream
Tssr39296	transcription start site region 39296	544 bp upstream